Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCCCACCAGCATTTTTCACCACCGATCCTTTTGCAATCCTGCCTATTCCTCCTCTCCCTTCGCACACGACCACCTTCCCTCTTACATTGATGTTTGAAAGTGAGCCTTGAACACAAAACTCAGACCCTCTCTTTCCACTACTGCCCGCGTATACAAGTGGTAAGAATTTTGATTGGAAGTCACTCGGCTGGAAGAGAGATTCACCGACATAAACTTCACCATTTCCGAGCTTGGCTAATGCCACGATTGTTCGATCAGGAGTGCTTGCTCCAACTGTTAGAACCCAAGGTGCTTCATTGGATAATGTGCTTTTGAAAGGGCCTGAGTTTCCAGCAGAACAGCTGACAAAAATTCCCTTCTGA
mRNA sequence
ATGGCAGCCCCACCAGCATTTTTCACCACCGATCCTTTTGCAATCCTGCCTATTCCTCCTCTCCCTTCGCACACGACCACCTTCCCTCTTACATTGATGTTTGAAAGAGTGCTTGCTCCAACTGTTAGAACCCAAGGTGCTTCATTGGATAATGTGCTTTTGAAAGGGCCTGAGTTTCCAGCAGAACAGCTGACAAAAATTCCCTTCTGA
Coding sequence (CDS)
ATGGCAGCCCCACCAGCATTTTTCACCACCGATCCTTTTGCAATCCTGCCTATTCCTCCTCTCCCTTCGCACACGACCACCTTCCCTCTTACATTGATGTTTGAAAGAGTGCTTGCTCCAACTGTTAGAACCCAAGGTGCTTCATTGGATAATGTGCTTTTGAAAGGGCCTGAGTTTCCAGCAGAACAGCTGACAAAAATTCCCTTCTGA
Protein sequence
MAAPPAFFTTDPFAILPIPPLPSHTTTFPLTLMFERVLAPTVRTQGASLDNVLLKGPEFPAEQLTKIPF
Homology
BLAST of Sgr024348 vs. NCBI nr
Match:
KAF4403978.1 (hypothetical protein G4B88_014434 [Cannabis sativa])
HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0
Query: 37 VLAPTVRTQGASLDNVLLKGPEFPAEQLTKIPF 70
VLAPTVR QGASLD VLLKGPEFPAEQLT IPF
Sbjct: 2 VLAPTVRIQGASLDKVLLKGPEFPAEQLTNIPF 34
BLAST of Sgr024348 vs. NCBI nr
Match:
KHG16057.1 (hypothetical protein F383_20744 [Gossypium arboreum])
HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0
Query: 37 VLAPTVRTQGASLDNVLLKGPEFPAEQLTKIPF 70
VLAPTVR+ GAS DNV+L+GPEFPAEQLT IPF
Sbjct: 2 VLAPTVRSHGASFDNVVLEGPEFPAEQLTNIPF 34
BLAST of Sgr024348 vs. NCBI nr
Match:
TKR91083.1 (hypothetical protein D5086_0000225940 [Populus alba])
HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05
Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 0
Query: 22 PSHTTTFP----LTLMFERVLAPTVRTQGASLDNVLLKGPEFPAEQLTKIPF 70
PS + FP T++ RVLAPTVR G SLDNV+LKGP+F A QLT IPF
Sbjct: 399 PSIRSPFPSFAVATILLSRVLAPTVRIHGTSLDNVILKGPKFLATQLTNIPF 450
BLAST of Sgr024348 vs. NCBI nr
Match:
KAF9869079.1 (hypothetical protein H0E87_027410 [Populus deltoides])
HSP 1 Score: 57.4 bits (137), Expect = 5.7e-05
Identity = 37/73 (50.68%), Postives = 43/73 (58.90%), Query Frame = 0
Query: 1 MAAPPAFFTTDPFAILP-IPPLPSH---TTTFPLTLMFERVLAPTVRTQGASLDNVLLKG 60
M P + T PF +P +P LP H +T+ E L TVR GASLDNV+LKG
Sbjct: 77 MPPPISQKTILPFTSIPNLPKLPHHMKRNSTYLSCQHKEECLLQTVRIHGASLDNVMLKG 136
Query: 61 PEFPAEQLTKIPF 70
PEFPA QLT IPF
Sbjct: 137 PEFPAAQLTNIPF 149
BLAST of Sgr024348 vs. ExPASy TrEMBL
Match:
A0A7J6IAA8 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_014434 PE=4 SV=1)
HSP 1 Score: 62.8 bits (151), Expect = 6.6e-07
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0
Query: 37 VLAPTVRTQGASLDNVLLKGPEFPAEQLTKIPF 70
VLAPTVR QGASLD VLLKGPEFPAEQLT IPF
Sbjct: 2 VLAPTVRIQGASLDKVLLKGPEFPAEQLTNIPF 34
BLAST of Sgr024348 vs. ExPASy TrEMBL
Match:
A0A0B0NTS5 (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_20744 PE=4 SV=1)
HSP 1 Score: 59.7 bits (143), Expect = 5.6e-06
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0
Query: 37 VLAPTVRTQGASLDNVLLKGPEFPAEQLTKIPF 70
VLAPTVR+ GAS DNV+L+GPEFPAEQLT IPF
Sbjct: 2 VLAPTVRSHGASFDNVVLEGPEFPAEQLTNIPF 34
BLAST of Sgr024348 vs. ExPASy TrEMBL
Match:
A0A4U5P5Z7 (YTH domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000225940 PE=4 SV=1)
HSP 1 Score: 59.3 bits (142), Expect = 7.3e-06
Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 0
Query: 22 PSHTTTFP----LTLMFERVLAPTVRTQGASLDNVLLKGPEFPAEQLTKIPF 70
PS + FP T++ RVLAPTVR G SLDNV+LKGP+F A QLT IPF
Sbjct: 399 PSIRSPFPSFAVATILLSRVLAPTVRIHGTSLDNVILKGPKFLATQLTNIPF 450
BLAST of Sgr024348 vs. ExPASy TrEMBL
Match:
A0A371HIT4 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_13785 PE=4 SV=1)
HSP 1 Score: 52.4 bits (124), Expect = 8.9e-04
Identity = 42/122 (34.43%), Postives = 46/122 (37.70%), Query Frame = 0
Query: 1 MAAPPAFFTTDPFAILPIPPLPSHTTTFPLTLMFER------------------------ 60
+A PPAF T+ PF L P SH TTFPLT F +
Sbjct: 9 IATPPAFRTSCPFTTLGTFPPMSHNTTFPLTSTFFKDPGRQNAEELFPFEPAYKSGNKLG 68
Query: 61 -----------------------------VLAPTVRTQGASLDNVLLKGPEFPAEQLTKI 70
VLAPTVR GAS + VL GP F AEQLTK
Sbjct: 69 EKSLGWNNDSPSYSAPFPSTADAAIFLSIVLAPTVRIHGASFERVLYSGPAFAAEQLTKT 128
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAF4403978.1 | 1.4e-06 | 90.91 | hypothetical protein G4B88_014434 [Cannabis sativa] | [more] |
KHG16057.1 | 1.2e-05 | 81.82 | hypothetical protein F383_20744 [Gossypium arboreum] | [more] |
TKR91083.1 | 1.5e-05 | 59.62 | hypothetical protein D5086_0000225940 [Populus alba] | [more] |
KAF9869079.1 | 5.7e-05 | 50.68 | hypothetical protein H0E87_027410 [Populus deltoides] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A7J6IAA8 | 6.6e-07 | 90.91 | Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_014434 PE=4 SV=1 | [more] |
A0A0B0NTS5 | 5.6e-06 | 81.82 | Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_20744 PE=4 SV=1 | [more] |
A0A4U5P5Z7 | 7.3e-06 | 59.62 | YTH domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000225940 PE=4 ... | [more] |
A0A371HIT4 | 8.9e-04 | 34.43 | Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_13785 P... | [more] |
Match Name | E-value | Identity | Description | |