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PI0024659 (gene) Melon (PI 482460) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGAGTCCATCGTGTAGTGGGTTTGGTTGGAACGATGAGCTCAAATGCGTCATTATCGAGAAAGACTTGTACGACATTTGGGTGAAGGTATGTTCTTGATTCTGTTTGTTTCTAATAGTAAATTGACTAATTAGTTCATGCAACACTTGTACAGAGTCATCAAGTTGCGAAGGGCCTCCTAAATAAACCTTTTTCCCATTACGACGACCTATGCTATGTATTTGGAAGAGATCGTGCAACAGGAGGTCGCGCTGAAACCTTTGTCGATGTTGGGTCCAACGTGCCTAGAGAGTACGATGGATTCTTCGCTTACGACGGGAACGATATGGAGTTCCCCACGATGAATAGTCAGGGACTGGACATCTCACCTGACAACATAATGGGCACACGACCCGGTCGGTTGTCTGAGGATAGGACTGGTTCGAGCGGTTCGAAGAAGAAATGGGGAGGGCAGGAATTAGAGACGGCGGAAATTATTCGCAGTGCCATGGAACAATGA ATGAGGAGTCCATCGTGTAGTGGGTTTGGTTGGAACGATGAGCTCAAATGCGTCATTATCGAGAAAGACTTGTACGACATTTGGGTGAAGAGTCATCAAGTTGCGAAGGGCCTCCTAAATAAACCTTTTTCCCATTACGACGACCTATGCTATGTATTTGGAAGAGATCGTGCAACAGGAGGTCGCGCTGAAACCTTTGTCGATGTTGGGTCCAACGTGCCTAGAGAGTACGATGGATTCTTCGCTTACGACGGGAACGATATGGAGTTCCCCACGATGAATAGTCAGGGACTGGACATCTCACCTGACAACATAATGGGCACACGACCCGGTCGGTTGTCTGAGGATAGGACTGGTTCGAGCGGTTCGAAGAAGAAATGGGGAGGGCAGGAATTAGAGACGGCGGAAATTATTCGCAGTGCCATGGAACAATGA ATGAGGAGTCCATCGTGTAGTGGGTTTGGTTGGAACGATGAGCTCAAATGCGTCATTATCGAGAAAGACTTGTACGACATTTGGGTGAAGAGTCATCAAGTTGCGAAGGGCCTCCTAAATAAACCTTTTTCCCATTACGACGACCTATGCTATGTATTTGGAAGAGATCGTGCAACAGGAGGTCGCGCTGAAACCTTTGTCGATGTTGGGTCCAACGTGCCTAGAGAGTACGATGGATTCTTCGCTTACGACGGGAACGATATGGAGTTCCCCACGATGAATAGTCAGGGACTGGACATCTCACCTGACAACATAATGGGCACACGACCCGGTCGGTTGTCTGAGGATAGGACTGGTTCGAGCGGTTCGAAGAAGAAATGGGGAGGGCAGGAATTAGAGACGGCGGAAATTATTCGCAGTGCCATGGAACAATGA MRSPSCSGFGWNDELKCVIIEKDLYDIWVKSHQVAKGLLNKPFSHYDDLCYVFGRDRATGGRAETFVDVGSNVPREYDGFFAYDGNDMEFPTMNSQGLDISPDNIMGTRPGRLSEDRTGSSGSKKKWGGQELETAEIIRSAMEQ Homology
BLAST of PI0024659 vs. ExPASy TrEMBL
Match: A0A5A7TZA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00090 PE=4 SV=1) HSP 1 Score: 186.0 bits (471), Expect = 1.1e-43 Identity = 84/143 (58.74%), Postives = 109/143 (76.22%), Query Frame = 0
BLAST of PI0024659 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 7.0e-43 Identity = 85/143 (59.44%), Postives = 108/143 (75.52%), Query Frame = 0
BLAST of PI0024659 vs. ExPASy TrEMBL
Match: A0A5A7U4M2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00330 PE=4 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 9.1e-43 Identity = 86/143 (60.14%), Postives = 107/143 (74.83%), Query Frame = 0
BLAST of PI0024659 vs. ExPASy TrEMBL
Match: A0A5A7U098 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00330 PE=4 SV=1) HSP 1 Score: 180.6 bits (457), Expect = 4.5e-42 Identity = 84/143 (58.74%), Postives = 107/143 (74.83%), Query Frame = 0
BLAST of PI0024659 vs. ExPASy TrEMBL
Match: A0A5A7VES2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002250 PE=4 SV=1) HSP 1 Score: 180.3 bits (456), Expect = 5.9e-42 Identity = 90/145 (62.07%), Postives = 107/145 (73.79%), Query Frame = 0
BLAST of PI0024659 vs. NCBI nr
Match: KAA0048374.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 186.0 bits (471), Expect = 2.2e-43 Identity = 84/143 (58.74%), Postives = 109/143 (76.22%), Query Frame = 0
BLAST of PI0024659 vs. NCBI nr
Match: TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 183.3 bits (464), Expect = 1.4e-42 Identity = 85/143 (59.44%), Postives = 108/143 (75.52%), Query Frame = 0
BLAST of PI0024659 vs. NCBI nr
Match: KAA0050782.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 183.0 bits (463), Expect = 1.9e-42 Identity = 86/143 (60.14%), Postives = 107/143 (74.83%), Query Frame = 0
BLAST of PI0024659 vs. NCBI nr
Match: KAA0047075.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 180.6 bits (457), Expect = 9.3e-42 Identity = 84/143 (58.74%), Postives = 107/143 (74.83%), Query Frame = 0
BLAST of PI0024659 vs. NCBI nr
Match: KAA0066208.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 180.3 bits (456), Expect = 1.2e-41 Identity = 90/145 (62.07%), Postives = 107/145 (73.79%), Query Frame = 0
BLAST of PI0024659 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). ) HSP 1 Score: 43.9 bits (102), Expect = 1.3e-04 Identity = 14/47 (29.79%), Postives = 30/47 (63.83%), Query Frame = 0
BLAST of PI0024659 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). ) HSP 1 Score: 43.9 bits (102), Expect = 1.3e-04 Identity = 14/47 (29.79%), Postives = 30/47 (63.83%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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