Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATCAAAGCGAGGTAAAGATGAAATCCTAGACACCGAACGTGATGAAACTAGAGCCGACCACGAGTCCACTGCTTCTACCGGAATGAACGTCGCCACCATCGTGGATGCCATCGTCGTCATCGCTAAGGAAAAGTTAGCCCACCAGCTCCAGAAGGCGTCGACAGTCACGTTTGTCCTACCCTCGGAGTCATCTGCGCAGCACAACCACCAAAACCCTCTTCATGCGCTATCGCTACCAGGCATGTGGGCTCACGCGCCACCCTCCAATCATCTTACCGCCAAATCCATTGCCTCTCATTTGTCGTCACCTGTCCAACCATCATACCTTCCTTTCCATCCGCAAGCCGACGCGCCGTCGCTGACCTCCGACAATGGACAACCATCAATTCTGGTATCCCAACCGTCGTTACCTCTTGATCCTTTACAACAACCTTATTTTCGTGGTATCGAAATCAACCAAAACTACAACAGACCTCGGTGCAATCCAAAAACCTGA
mRNA sequence
ATGGTATCAAAGCGAGGTAAAGATGAAATCCTAGACACCGAACGTGATGAAACTAGAGCCGACCACGAGTCCACTGCTTCTACCGGAATGAACGTCGCCACCATCGTGGATGCCATCGTCGTCATCGCTAAGGAAAAGTTAGCCCACCAGCTCCAGAAGGCGTCGACAGTCACGTTTGTCCTACCCTCGGAGTCATCTGCGCAGCACAACCACCAAAACCCTCTTCATGCGCTATCGCTACCAGGCATGTGGGCTCACGCGCCACCCTCCAATCATCTTACCGCCAAATCCATTGCCTCTCATTTGTCGTCACCTGTCCAACCATCATACCTTCCTTTCCATCCGCAAGCCGACGCGCCGTCGCTGACCTCCGACAATGGACAACCATCAATTCTGGTATCCCAACCGTCGTTACCTCTTGATCCTTTACAACAACCTTATTTTCGTGGTATCGAAATCAACCAAAACTACAACAGACCTCGGTGCAATCCAAAAACCTGA
Coding sequence (CDS)
ATGGTATCAAAGCGAGGTAAAGATGAAATCCTAGACACCGAACGTGATGAAACTAGAGCCGACCACGAGTCCACTGCTTCTACCGGAATGAACGTCGCCACCATCGTGGATGCCATCGTCGTCATCGCTAAGGAAAAGTTAGCCCACCAGCTCCAGAAGGCGTCGACAGTCACGTTTGTCCTACCCTCGGAGTCATCTGCGCAGCACAACCACCAAAACCCTCTTCATGCGCTATCGCTACCAGGCATGTGGGCTCACGCGCCACCCTCCAATCATCTTACCGCCAAATCCATTGCCTCTCATTTGTCGTCACCTGTCCAACCATCATACCTTCCTTTCCATCCGCAAGCCGACGCGCCGTCGCTGACCTCCGACAATGGACAACCATCAATTCTGGTATCCCAACCGTCGTTACCTCTTGATCCTTTACAACAACCTTATTTTCGTGGTATCGAAATCAACCAAAACTACAACAGACCTCGGTGCAATCCAAAAACCTGA
Protein sequence
MVSKRGKDEILDTERDETRADHESTASTGMNVATIVDAIVVIAKEKLAHQLQKASTVTFVLPSESSAQHNHQNPLHALSLPGMWAHAPPSNHLTAKSIASHLSSPVQPSYLPFHPQADAPSLTSDNGQPSILVSQPSLPLDPLQQPYFRGIEINQNYNRPRCNPKT
Homology
BLAST of PI0009053 vs. ExPASy TrEMBL
Match:
A0A5A7T3J8 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold154G00060 PE=4 SV=1)
HSP 1 Score: 90.1 bits (222), Expect = 9.3e-15
Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 0
Query: 1 MVSKRGKDEILDTERDETRADHESTASTGMNVATIVDAIVVIAKEKLAHQLQKASTVTFV 60
MVS++GKD+ LDT +ET+ + + A+ A+VV+ KL QLQK VT
Sbjct: 1 MVSEQGKDDTLDTVINETKKETAAAATA---------AVVVVG--KLLQQLQKMPVVTTG 60
Query: 61 LPSESSAQHNHQNPLHALSLPGMWAHAPPSNHLTAKSIASHLSSPVQP 109
SESSAQH+ QNP HA SL +WAH PPSNHLT + I SH+S PVQP
Sbjct: 61 ASSESSAQHSGQNPPHAPSLSCVWAHVPPSNHLTTQPIVSHVSFPVQP 97
BLAST of PI0009053 vs. ExPASy TrEMBL
Match:
A0A5D3D767 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00420 PE=4 SV=1)
HSP 1 Score: 85.5 bits (210), Expect = 2.3e-13
Identity = 63/164 (38.41%), Postives = 86/164 (52.44%), Query Frame = 0
Query: 1 MVSKRGKDEILDTERDETRADHESTASTGMNVATIVDAIVVIAKEKLAHQLQKASTVTFV 60
MVS++ +E L+ +ET+ + E + VA VDA VV+A EKL H LQK
Sbjct: 1 MVSEQSNNETLENNLEETQIETEPVT---VVVAAAVDAAVVVATEKLLHNLQKPPIYPTG 60
Query: 61 LPSESSAQHNHQNPLHALSLPGMWAHAPPSNHLTAKSIASHLSSPVQPSYLPFHPQADAP 120
+ S+ A + Q +HA + G WAH P H+TA+ + + S VQPS HP AP
Sbjct: 61 VVSQPYAPLSDQKMIHASLMSGAWAHVSPPFHVTAQPVPFYAPSDVQPSNSSGHPHPHAP 120
Query: 121 SLTSDNGQPSI-----LVSQPSLPLDPLQQPYFRGIEINQNYNR 160
+ S QPS L S+ L +D LQQP F G EI+Q N+
Sbjct: 121 PM-SFVQQPSTVNLSNLYSKQPLYVDSLQQPLFSGNEIDQPQNK 160
BLAST of PI0009053 vs. ExPASy TrEMBL
Match:
A0A5D3DJM7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00420 PE=4 SV=1)
HSP 1 Score: 82.0 bits (201), Expect = 2.5e-12
Identity = 63/164 (38.41%), Postives = 81/164 (49.39%), Query Frame = 0
Query: 1 MVSKRGKDEILDTERDETRADHESTASTGMNVATIVDAIVVIAKEKLAHQLQKASTVTFV 60
MVS++ +E L+ ET+ + E A+ A VDA V A EKL LQK
Sbjct: 1 MVSEQSNNETLENNLGETQIETEPVAAA---AAAAVDAAVAAAVEKLLQNLQKPPIYPTG 60
Query: 61 LPSESSAQHNHQNPLHALSLPGMWAHAPPSNHLTAKSIASHLSSPVQPSYLPFHPQADAP 120
+ + A Q +HA + G WAHAPP H+TA + + S VQPS HP AP
Sbjct: 61 VVPQPYAPPFDQKLIHAPLVSGAWAHAPPPFHVTAHPVPFYAPSDVQPSNPSGHPHPHAP 120
Query: 121 SLTSDNGQPSIL-----VSQPSLPLDPLQQPYFRGIEINQNYNR 160
S TS PS + S+ L +DPLQQP F G I+Q NR
Sbjct: 121 S-TSSGQHPSTVNLSNQYSKQQLYVDPLQQPLFSGNGIDQPQNR 160
BLAST of PI0009053 vs. ExPASy TrEMBL
Match:
A0A5D3C9I6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00590 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 61/161 (37.89%), Postives = 82/161 (50.93%), Query Frame = 0
Query: 3 SKRGKDEILDTERDETRADHESTASTGMNVATIVDAIVVIAKEKLAHQLQKASTVTFVLP 62
++R +EIL+ T H T + + VAT A+V EKL ++Q S P
Sbjct: 171 TERSNNEILEKSLGNT---HTKTKAAAVVVAT---AVVDTTMEKLLQRIQTPSIYPMGQP 230
Query: 63 SESSAQHNHQNPLHALSLPGMWAHAPPSNHLTAKSIASHLSSPVQPSYLPFHPQADAPSL 122
S AQ Q PLHA L G WAHAPPS LT+ SI + SS VQ S+ H AP +
Sbjct: 231 SPPCAQPFDQKPLHAPPLSGAWAHAPPSVSLTSHSIHFYASSLVQSSHPSGHSPRHAPPI 290
Query: 123 T--SDNGQPSILVSQPSLPLDPLQQPYFRGIEINQNYNRPR 162
+ S L S +L +DPL+QP+F ++Q +NR R
Sbjct: 291 AVGQQPSKLSRLYSNANLYVDPLEQPFFYRNGVDQRHNRSR 325
BLAST of PI0009053 vs. ExPASy TrEMBL
Match:
A0A5A7V3J5 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00020 PE=4 SV=1)
HSP 1 Score: 79.0 bits (193), Expect = 2.1e-11
Identity = 61/166 (36.75%), Postives = 83/166 (50.00%), Query Frame = 0
Query: 1 MVSKRGKDEILDTERDETRADHE--STASTGMNVATIVDAIVVIAKEKLAHQLQKASTVT 60
MVS++ +E L+ ET+ + E + A+ +A VDA V EKL LQK
Sbjct: 1 MVSEQSNNETLENNLGETQIETERVTAAAAAAGIAAAVDAAV----EKLLQNLQKPPIYP 60
Query: 61 FVLPSESSAQHNHQNPLHALSLPGMWAHAPPSNHLTAKSIASHLSSPVQPSYLPFHPQAD 120
+ + A + Q +HA + G+WAHAPP H+TA + + VQPS HP
Sbjct: 61 TGVVPQPYASPSDQKLIHAPLVSGVWAHAPPPFHVTAHPVPFYAPLDVQPSNPSGHPHPH 120
Query: 121 APSLTSDNGQPSIL-----VSQPSLPLDPLQQPYFRGIEINQNYNR 160
APS TS PS + S+ L +DPLQQP F G I+Q NR
Sbjct: 121 APS-TSSGQHPSTVNLSNQYSKQQLYVDPLQQPLFSGNGIDQPQNR 161
BLAST of PI0009053 vs. NCBI nr
Match:
KAA0037910.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYK18987.1 Beta-galactosidase [Cucumis melo var. makuwa])
HSP 1 Score: 90.1 bits (222), Expect = 1.9e-14
Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 0
Query: 1 MVSKRGKDEILDTERDETRADHESTASTGMNVATIVDAIVVIAKEKLAHQLQKASTVTFV 60
MVS++GKD+ LDT +ET+ + + A+ A+VV+ KL QLQK VT
Sbjct: 1 MVSEQGKDDTLDTVINETKKETAAAATA---------AVVVVG--KLLQQLQKMPVVTTG 60
Query: 61 LPSESSAQHNHQNPLHALSLPGMWAHAPPSNHLTAKSIASHLSSPVQP 109
SESSAQH+ QNP HA SL +WAH PPSNHLT + I SH+S PVQP
Sbjct: 61 ASSESSAQHSGQNPPHAPSLSCVWAHVPPSNHLTTQPIVSHVSFPVQP 97
BLAST of PI0009053 vs. NCBI nr
Match:
TYK19407.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])
HSP 1 Score: 85.5 bits (210), Expect = 4.7e-13
Identity = 63/164 (38.41%), Postives = 86/164 (52.44%), Query Frame = 0
Query: 1 MVSKRGKDEILDTERDETRADHESTASTGMNVATIVDAIVVIAKEKLAHQLQKASTVTFV 60
MVS++ +E L+ +ET+ + E + VA VDA VV+A EKL H LQK
Sbjct: 1 MVSEQSNNETLENNLEETQIETEPVT---VVVAAAVDAAVVVATEKLLHNLQKPPIYPTG 60
Query: 61 LPSESSAQHNHQNPLHALSLPGMWAHAPPSNHLTAKSIASHLSSPVQPSYLPFHPQADAP 120
+ S+ A + Q +HA + G WAH P H+TA+ + + S VQPS HP AP
Sbjct: 61 VVSQPYAPLSDQKMIHASLMSGAWAHVSPPFHVTAQPVPFYAPSDVQPSNSSGHPHPHAP 120
Query: 121 SLTSDNGQPSI-----LVSQPSLPLDPLQQPYFRGIEINQNYNR 160
+ S QPS L S+ L +D LQQP F G EI+Q N+
Sbjct: 121 PM-SFVQQPSTVNLSNLYSKQPLYVDSLQQPLFSGNEIDQPQNK 160
BLAST of PI0009053 vs. NCBI nr
Match:
TYK23439.1 (Beta-galactosidase [Cucumis melo var. makuwa])
HSP 1 Score: 82.0 bits (201), Expect = 5.2e-12
Identity = 63/164 (38.41%), Postives = 81/164 (49.39%), Query Frame = 0
Query: 1 MVSKRGKDEILDTERDETRADHESTASTGMNVATIVDAIVVIAKEKLAHQLQKASTVTFV 60
MVS++ +E L+ ET+ + E A+ A VDA V A EKL LQK
Sbjct: 1 MVSEQSNNETLENNLGETQIETEPVAAA---AAAAVDAAVAAAVEKLLQNLQKPPIYPTG 60
Query: 61 LPSESSAQHNHQNPLHALSLPGMWAHAPPSNHLTAKSIASHLSSPVQPSYLPFHPQADAP 120
+ + A Q +HA + G WAHAPP H+TA + + S VQPS HP AP
Sbjct: 61 VVPQPYAPPFDQKLIHAPLVSGAWAHAPPPFHVTAHPVPFYAPSDVQPSNPSGHPHPHAP 120
Query: 121 SLTSDNGQPSIL-----VSQPSLPLDPLQQPYFRGIEINQNYNR 160
S TS PS + S+ L +DPLQQP F G I+Q NR
Sbjct: 121 S-TSSGQHPSTVNLSNQYSKQQLYVDPLQQPLFSGNGIDQPQNR 160
BLAST of PI0009053 vs. NCBI nr
Match:
TYK08627.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 79.3 bits (194), Expect = 3.4e-11
Identity = 61/161 (37.89%), Postives = 82/161 (50.93%), Query Frame = 0
Query: 3 SKRGKDEILDTERDETRADHESTASTGMNVATIVDAIVVIAKEKLAHQLQKASTVTFVLP 62
++R +EIL+ T H T + + VAT A+V EKL ++Q S P
Sbjct: 171 TERSNNEILEKSLGNT---HTKTKAAAVVVAT---AVVDTTMEKLLQRIQTPSIYPMGQP 230
Query: 63 SESSAQHNHQNPLHALSLPGMWAHAPPSNHLTAKSIASHLSSPVQPSYLPFHPQADAPSL 122
S AQ Q PLHA L G WAHAPPS LT+ SI + SS VQ S+ H AP +
Sbjct: 231 SPPCAQPFDQKPLHAPPLSGAWAHAPPSVSLTSHSIHFYASSLVQSSHPSGHSPRHAPPI 290
Query: 123 T--SDNGQPSILVSQPSLPLDPLQQPYFRGIEINQNYNRPR 162
+ S L S +L +DPL+QP+F ++Q +NR R
Sbjct: 291 AVGQQPSKLSRLYSNANLYVDPLEQPFFYRNGVDQRHNRSR 325
BLAST of PI0009053 vs. NCBI nr
Match:
KAA0061447.1 (Beta-galactosidase [Cucumis melo var. makuwa])
HSP 1 Score: 79.0 bits (193), Expect = 4.4e-11
Identity = 61/166 (36.75%), Postives = 83/166 (50.00%), Query Frame = 0
Query: 1 MVSKRGKDEILDTERDETRADHE--STASTGMNVATIVDAIVVIAKEKLAHQLQKASTVT 60
MVS++ +E L+ ET+ + E + A+ +A VDA V EKL LQK
Sbjct: 1 MVSEQSNNETLENNLGETQIETERVTAAAAAAGIAAAVDAAV----EKLLQNLQKPPIYP 60
Query: 61 FVLPSESSAQHNHQNPLHALSLPGMWAHAPPSNHLTAKSIASHLSSPVQPSYLPFHPQAD 120
+ + A + Q +HA + G+WAHAPP H+TA + + VQPS HP
Sbjct: 61 TGVVPQPYASPSDQKLIHAPLVSGVWAHAPPPFHVTAHPVPFYAPLDVQPSNPSGHPHPH 120
Query: 121 APSLTSDNGQPSIL-----VSQPSLPLDPLQQPYFRGIEINQNYNR 160
APS TS PS + S+ L +DPLQQP F G I+Q NR
Sbjct: 121 APS-TSSGQHPSTVNLSNQYSKQQLYVDPLQQPLFSGNGIDQPQNR 161
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7T3J8 | 9.3e-15 | 50.93 | Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold154G0... | [more] |
A0A5D3D767 | 2.3e-13 | 38.41 | Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O... | [more] |
A0A5D3DJM7 | 2.5e-12 | 38.41 | Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G0... | [more] |
A0A5D3C9I6 | 1.6e-11 | 37.89 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... | [more] |
A0A5A7V3J5 | 2.1e-11 | 36.75 | Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00... | [more] |
Match Name | E-value | Identity | Description | |
KAA0037910.1 | 1.9e-14 | 50.93 | Beta-galactosidase [Cucumis melo var. makuwa] >TYK18987.1 Beta-galactosidase [Cu... | [more] |
TYK19407.1 | 4.7e-13 | 38.41 | Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] | [more] |
TYK23439.1 | 5.2e-12 | 38.41 | Beta-galactosidase [Cucumis melo var. makuwa] | [more] |
TYK08627.1 | 3.4e-11 | 37.89 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
KAA0061447.1 | 4.4e-11 | 36.75 | Beta-galactosidase [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |