
MS009009 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AGCATGCAACTTGTACTATTCTTTCTAGGCCTCTTACTGATCTCGTCGCCCCATCCAACGGACGCAAGACATGTAAGATCTCTGTTCAAAATGCCCAGATTTACGGTCGAGATTCGCAACGGGATGGTCGGGCACGTGCTGACCAGCCACTGCTGGTCGTCGGAGGACGACATAGGGGTGCATGCGCTGTACGACAACCAGGAACATCACTGGTCTTTCAAGAAGAATTTTTGGGGGACAACAAAATTCCGCTGTAAATTGGATTGGGCAGAAGGAACACAGGAGTTCAATGCCTTTTATGTTGATCAAGATTTCTTCGATAACTACTGTGCCAACTTTAGGTGTGTTTGGGTGGCCAAACAAGATGCCATTTATGGGGTCAATCGAGGTGGTAAACTGGATTTTAAGTTCTATTGGAAATTG AGCATGCAACTTGTACTATTCTTTCTAGGCCTCTTACTGATCTCGTCGCCCCATCCAACGGACGCAAGACATGTAAGATCTCTGTTCAAAATGCCCAGATTTACGGTCGAGATTCGCAACGGGATGGTCGGGCACGTGCTGACCAGCCACTGCTGGTCGTCGGAGGACGACATAGGGGTGCATGCGCTGTACGACAACCAGGAACATCACTGGTCTTTCAAGAAGAATTTTTGGGGGACAACAAAATTCCGCTGTAAATTGGATTGGGCAGAAGGAACACAGGAGTTCAATGCCTTTTATGTTGATCAAGATTTCTTCGATAACTACTGTGCCAACTTTAGGTGTGTTTGGGTGGCCAAACAAGATGCCATTTATGGGGTCAATCGAGGTGGTAAACTGGATTTTAAGTTCTATTGGAAATTG AGCATGCAACTTGTACTATTCTTTCTAGGCCTCTTACTGATCTCGTCGCCCCATCCAACGGACGCAAGACATGTAAGATCTCTGTTCAAAATGCCCAGATTTACGGTCGAGATTCGCAACGGGATGGTCGGGCACGTGCTGACCAGCCACTGCTGGTCGTCGGAGGACGACATAGGGGTGCATGCGCTGTACGACAACCAGGAACATCACTGGTCTTTCAAGAAGAATTTTTGGGGGACAACAAAATTCCGCTGTAAATTGGATTGGGCAGAAGGAACACAGGAGTTCAATGCCTTTTATGTTGATCAAGATTTCTTCGATAACTACTGTGCCAACTTTAGGTGTGTTTGGGTGGCCAAACAAGATGCCATTTATGGGGTCAATCGAGGTGGTAAACTGGATTTTAAGTTCTATTGGAAATTG SMQLVLFFLGLLLISSPHPTDARHVRSLFKMPRFTVEIRNGMVGHVLTSHCWSSEDDIGVHALYDNQEHHWSFKKNFWGTTKFRCKLDWAEGTQEFNAFYVDQDFFDNYCANFRCVWVAKQDAIYGVNRGGKLDFKFYWKL Homology
BLAST of MS009009 vs. NCBI nr
Match: KAG7031483.1 (S-protein-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 163.3 bits (412), Expect = 1.5e-36 Identity = 73/146 (50.00%), Postives = 102/146 (69.86%), Query Frame = 0
BLAST of MS009009 vs. NCBI nr
Match: KAG6600849.1 (S-protein-like 74, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 154.8 bits (390), Expect = 5.4e-34 Identity = 62/116 (53.45%), Postives = 87/116 (75.00%), Query Frame = 0
BLAST of MS009009 vs. NCBI nr
Match: XP_023546939.1 (S-protein homolog 74-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 153.3 bits (386), Expect = 1.6e-33 Identity = 61/116 (52.59%), Postives = 86/116 (74.14%), Query Frame = 0
BLAST of MS009009 vs. NCBI nr
Match: XP_023546843.1 (S-protein homolog 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 122.5 bits (306), Expect = 3.0e-24 Identity = 51/109 (46.79%), Postives = 74/109 (67.89%), Query Frame = 0
BLAST of MS009009 vs. NCBI nr
Match: KAG6600848.1 (S-protein-like 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 122.5 bits (306), Expect = 3.0e-24 Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 0
BLAST of MS009009 vs. ExPASy Swiss-Prot
Match: O23020 (S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 2.1e-09 Identity = 36/105 (34.29%), Postives = 51/105 (48.57%), Query Frame = 0
BLAST of MS009009 vs. ExPASy Swiss-Prot
Match: Q9LW22 (S-protein homolog 21 OS=Arabidopsis thaliana OX=3702 GN=SPH21 PE=3 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 3.8e-06 Identity = 39/144 (27.08%), Postives = 64/144 (44.44%), Query Frame = 0
BLAST of MS009009 vs. ExPASy TrEMBL
Match: A0A6J1FMU2 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111447244 PE=3 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 4.2e-24 Identity = 51/109 (46.79%), Postives = 74/109 (67.89%), Query Frame = 0
BLAST of MS009009 vs. ExPASy TrEMBL
Match: A0A0A0KL79 (S-protein homolog OS=Cucumis sativus OX=3659 GN=Csa_5G016040 PE=3 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23 Identity = 52/126 (41.27%), Postives = 75/126 (59.52%), Query Frame = 0
BLAST of MS009009 vs. ExPASy TrEMBL
Match: A0A1S3BUQ9 (S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103493877 PE=3 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 6.7e-22 Identity = 47/109 (43.12%), Postives = 67/109 (61.47%), Query Frame = 0
BLAST of MS009009 vs. ExPASy TrEMBL
Match: A0A0A0KSN2 (S-protein homolog OS=Cucumis sativus OX=3659 GN=Csa_5G538550 PE=3 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 8.7e-22 Identity = 49/138 (35.51%), Postives = 82/138 (59.42%), Query Frame = 0
BLAST of MS009009 vs. ExPASy TrEMBL
Match: A0A6J1F5H5 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111441018 PE=3 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21 Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 0
BLAST of MS009009 vs. TAIR 10
Match: AT1G04645.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 63.5 bits (153), Expect = 1.5e-10 Identity = 36/105 (34.29%), Postives = 51/105 (48.57%), Query Frame = 0
BLAST of MS009009 vs. TAIR 10
Match: AT1G26796.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 57.4 bits (137), Expect = 1.1e-08 Identity = 40/140 (28.57%), Postives = 58/140 (41.43%), Query Frame = 0
BLAST of MS009009 vs. TAIR 10
Match: AT3G55252.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 55.8 bits (133), Expect = 3.2e-08 Identity = 40/132 (30.30%), Postives = 57/132 (43.18%), Query Frame = 0
BLAST of MS009009 vs. TAIR 10
Match: AT3G54925.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 55.8 bits (133), Expect = 3.2e-08 Identity = 33/99 (33.33%), Postives = 47/99 (47.47%), Query Frame = 0
BLAST of MS009009 vs. TAIR 10
Match: AT3G26880.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 52.8 bits (125), Expect = 2.7e-07 Identity = 39/144 (27.08%), Postives = 64/144 (44.44%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
|