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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSsinglepolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCGGAATCAGTTTCCACCAGCAGGAATCGAAGATTCCAGACCTCCATCTTCTCCGATTCTGAAATCGACGTCGCCATACAGCTTATTCATCTCAGCGAAGACTCCGATTATCATGACGAACTCCCCGCCTCCTCTACCAGTTGCAGCGACGACAAATCCCTCGCCTCCGCCTCCAACTCCAACGCCGATGAAATGGAAGACGACGGAAGAAACAACGGCCGCCGCGGAACTAAAACCACTCCGATAGAAGACATCTACGAAGAAATCGGAGACGGCGCGAATCGGAGGCGGAGGAAGCGGCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTGTGATTTTTGTGAAGTAA mRNA sequence ATGGCGGAATCAGTTTCCACCAGCAGGAATCGAAGATTCCAGACCTCCATCTTCTCCGATTCTGAAATCGACGTCGCCATACAGCTTATTCATCTCAGCGAAGACTCCGATTATCATGACGAACTCCCCGCCTCCTCTACCAGTTGCAGCGACGACAAATCCCTCGCCTCCGCCTCCAACTCCAACGCCGATGAAATGGAAGACGACGGAAGAAACAACGGCCGCCGCGGAACTAAAACCACTCCGATAGAAGACATCTACGAAGAAATCGGAGACGGCGCGAATCGGAGGCGGAGGAAGCGGCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTGTGATTTTTGTGAAGTAA Coding sequence (CDS) ATGGCGGAATCAGTTTCCACCAGCAGGAATCGAAGATTCCAGACCTCCATCTTCTCCGATTCTGAAATCGACGTCGCCATACAGCTTATTCATCTCAGCGAAGACTCCGATTATCATGACGAACTCCCCGCCTCCTCTACCAGTTGCAGCGACGACAAATCCCTCGCCTCCGCCTCCAACTCCAACGCCGATGAAATGGAAGACGACGGAAGAAACAACGGCCGCCGCGGAACTAAAACCACTCCGATAGAAGACATCTACGAAGAAATCGGAGACGGCGCGAATCGGAGGCGGAGGAAGCGGCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTGTGATTTTTGTGAAGTAA Protein sequence MAESVSTSRNRRFQTSIFSDSEIDVAIQLIHLSEDSDYHDELPASSTSCSDDKSLASASNSNADEMEDDGRNNGRRGTKTTPIEDIYEEIGDGANRRRRKRRSRSVYEIYKLTKPVIFVK
Homology
BLAST of Csor.00g262290 vs. NCBI nr
Match: KAG6588821.1 (hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 223 bits (567), Expect = 6.24e-73 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 Query: 1 MAESVSTSRNRRFQTSIFSDSEIDVAIQLIHLSEDSDYHDELPASSTSCSDDKSLASASN 60 MAESVSTSRNRRFQTSIFSDSEIDVAIQLIHLSEDSDYHDELPASSTSCSDDKSLASASN Sbjct: 1 MAESVSTSRNRRFQTSIFSDSEIDVAIQLIHLSEDSDYHDELPASSTSCSDDKSLASASN 60
Query: 61 SNADEMEDDGRNNGRRGTKTTPIEDIYEEIGDGANRRRRKRRSRSVYEIYKLTKPVIFVK 120 SNADEMEDDGRNNGRRGTKTTPIEDIYEEIGDGANRRRRKRRSRSVYEIYKLTKPVIFVK Sbjct: 61 SNADEMEDDGRNNGRRGTKTTPIEDIYEEIGDGANRRRRKRRSRSVYEIYKLTKPVIFVK 120
BLAST of Csor.00g262290 vs. NCBI nr
Match: KAG6571728.1 (hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 145 bits (367), Expect = 2.26e-42 Identity = 88/126 (69.84%), Postives = 103/126 (81.75%), Query Frame = 0 Query: 1 MAESVSTSRNRRFQTSIFSDSEIDVAIQLIHLSEDSDYHDELPASSTSCSDDKSLASASN 60 MA+S+S+ +NRRF+TS+FSDSEIDVAIQL+HLSEDSDY ASSTSCSDDKS+ASA++ Sbjct: 1 MAKSISSCKNRRFRTSVFSDSEIDVAIQLLHLSEDSDYLANTIASSTSCSDDKSVASATS 60
Query: 61 S-NADEMEDDG-RNNGRRGTKTTP----IEDIYEEIGDGANRRRRKRRSRSVYEIYKLTK 120 + NA MEDDG ++ RRG P IEDI+EEIGD +NRRRRKRRSRSVYEIYKLTK Sbjct: 61 ATNAAGMEDDGSHSSSRRGATLVPTTSLIEDIFEEIGDSSNRRRRKRRSRSVYEIYKLTK 120
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6588821.1 | 6.24e-73 | 100.00 | hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6571728.1 | 2.26e-42 | 69.84 | hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 36..85 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 42..63 |
Relationships
The following mRNA feature(s) are a part of this gene:
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