Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGAGGAGGTGAGTCCGGCGTGTTCGAAGATTCTCGGACTGTAGAGCATTATACCGTCGATGCCGGTGGCTTGCTGGAAGAAGTGGATGCCGATGGCAGAGATCAGGATATGGCGGACCGTCGGTGTTGGGCGGAGGAAGAGATCCTTCCAGACGTCTTTGCCGCTACGGCTGCGTTTGGGGAGATGGATGACGTCGTCGGTGCAATGGGGAGGGATTCCGGCAGCTTGTTTGATGTGGGCGAGGCGGAGTTGGGCTTCGTGAGGGGAGTCGGAGGTACGAAGGAGAACGGAAGTGGCGTGGGCGAGGCGGCCTTGCATGACGAGCCAGCGAGGAGATTCGGGCATGAGGAGAACGATGAGAACGAGGAAAGCAGAGGGGAAGACGCCGATTCCGAGCATGAATCGCCATCCCAGGTGAGTGGGTAG
mRNA sequence
ATGGTTGGAGGAGGTGAGTCCGGCGTGTTCGAAGATTCTCGGACTGTAGAGCATTATACCGTCGATGCCGGTGGCTTGCTGGAAGAAGTGGATGCCGATGGCAGAGATCAGGATATGGCGGACCGTCGGTGTTGGGCGGAGGAAGAGATCCTTCCAGACGTCTTTGCCGCTACGGCTGCGTTTGGGGAGATGGATGACGTCGTCGGTGCAATGGGGAGGGATTCCGGCAGCTTGTTTGATGTGGGCGAGGCGGAGTTGGGCTTCGTGAGGGGAGTCGGAGGTACGAAGGAGAACGGAAGTGGCGTGGGCGAGGCGGCCTTGCATGACGAGCCAGCGAGGAGATTCGGGCATGAGGAGAACGATGAGAACGAGGAAAGCAGAGGGGAAGACGCCGATTCCGAGCATGAATCGCCATCCCAGGTGAGTGGGTAG
Coding sequence (CDS)
ATGGTTGGAGGAGGTGAGTCCGGCGTGTTCGAAGATTCTCGGACTGTAGAGCATTATACCGTCGATGCCGGTGGCTTGCTGGAAGAAGTGGATGCCGATGGCAGAGATCAGGATATGGCGGACCGTCGGTGTTGGGCGGAGGAAGAGATCCTTCCAGACGTCTTTGCCGCTACGGCTGCGTTTGGGGAGATGGATGACGTCGTCGGTGCAATGGGGAGGGATTCCGGCAGCTTGTTTGATGTGGGCGAGGCGGAGTTGGGCTTCGTGAGGGGAGTCGGAGGTACGAAGGAGAACGGAAGTGGCGTGGGCGAGGCGGCCTTGCATGACGAGCCAGCGAGGAGATTCGGGCATGAGGAGAACGATGAGAACGAGGAAAGCAGAGGGGAAGACGCCGATTCCGAGCATGAATCGCCATCCCAGGTGAGTGGGTAG
Protein sequence
MVGGGESGVFEDSRTVEHYTVDAGGLLEEVDADGRDQDMADRRCWAEEEILPDVFAATAAFGEMDDVVGAMGRDSGSLFDVGEAELGFVRGVGGTKENGSGVGEAALHDEPARRFGHEENDENEESRGEDADSEHESPSQVSG
Homology
BLAST of Csor.00g260210 vs. NCBI nr
Match:
KAG6588614.1 (hypothetical protein SDJN03_17179, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 275 bits (704), Expect = 4.40e-93
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query: 1 MVGGGESGVFEDSRTVEHYTVDAGGLLEEVDADGRDQDMADRRCWAEEEILPDVFAATAA 60
MVGGGESGVFEDSRTVEHYTVDAGGLLEEVDADGRDQDMADRRCWAEEEILPDVFAATAA
Sbjct: 1 MVGGGESGVFEDSRTVEHYTVDAGGLLEEVDADGRDQDMADRRCWAEEEILPDVFAATAA 60
Query: 61 FGEMDDVVGAMGRDSGSLFDVGEAELGFVRGVGGTKENGSGVGEAALHDEPARRFGHEEN 120
FGEMDDVVGAMGRDSGSLFDVGEAELGFVRGVGGTKENGSGVGEAALHDEPARRFGHEEN
Sbjct: 61 FGEMDDVVGAMGRDSGSLFDVGEAELGFVRGVGGTKENGSGVGEAALHDEPARRFGHEEN 120
Query: 121 DENEESRGEDADSEHESPSQVSG 143
DENEESRGEDADSEHESPSQVSG
Sbjct: 121 DENEESRGEDADSEHESPSQVSG 143
BLAST of Csor.00g260210 vs. NCBI nr
Match:
GER42247.1 (NF-X-like 1, partial [Striga asiatica])
HSP 1 Score: 77.8 bits (190), Expect = 8.16e-14
Identity = 58/136 (42.65%), Postives = 75/136 (55.15%), Query Frame = 0
Query: 6 ESGVFEDSRTVEHYTVDAGGLLEEVDADGRDQDMADRRCWAEEEILPDVFAATAAFGEMD 65
+ G+ E R VE Y VDA LLE+VDA+ D+ D AE E+ P A A G D
Sbjct: 176 DPGLLEYGRAVEDYGVDAADLLEDVDAERAHGDVEDDGGRAE-EVAPHTLAVVGARGGDD 235
Query: 66 DVV---GAMGRDSGSLFDVGEAELGFVRGVGGTKENGSGVGEAALHDEPARRFGHEENDE 125
DVV +G +G LFDV E E F GVGG E+ +G+AALHDEP H+E +
Sbjct: 236 DVVVVVAVLGY-AGRLFDVVETEERFFGGVGGLVEDALRLGDAALHDEPTGGLRHDERAD 295
Query: 126 NEESRGEDADSEHESP 138
++ +D D+EHE P
Sbjct: 296 DDADGRDDPDAEHEPP 309
BLAST of Csor.00g260210 vs. NCBI nr
Match:
KAB8090643.1 (hypothetical protein EE612_015901, partial [Oryza sativa] >BAS82780.1 Os03g0197175, partial [Oryza sativa Japonica Group])
HSP 1 Score: 73.2 bits (178), Expect = 3.91e-12
Identity = 55/127 (43.31%), Postives = 71/127 (55.91%), Query Frame = 0
Query: 4 GGESGVFEDSRTVEHYTVDAGGLLEEVDADGRDQDMADRRCWAEEEILPDVFAATAAFGE 63
G E+ V E R V+H VDAGGLLEE++A+ D+ A R AE+++ PD A A
Sbjct: 176 GVEARVVEHPRAVQHDGVDAGGLLEELEAEAGDEYAAHGRRRAEQQVPPDTLAVGAP-AL 235
Query: 64 MDD-----VVGAMGRDSGSLFDVGEAELGFVRGVGGTKENGSGVGEAALHDEPARRFGHE 123
+DD +VG D+ + DV E LG R VGG E+ S V +A LHDEP RR H
Sbjct: 236 VDDGYNFVLVGDPFGDADRVLDVREPLLGLGRRVGGLLEDTSRVADAPLHDEPPRRLRHG 295
Query: 124 ENDENEE 125
E+ EE
Sbjct: 296 EDAHGEE 301
BLAST of Csor.00g260210 vs. NCBI nr
Match:
CAB3505007.1 (unnamed protein product [Digitaria exilis])
HSP 1 Score: 66.6 bits (161), Expect = 1.20e-09
Identity = 52/140 (37.14%), Postives = 71/140 (50.71%), Query Frame = 0
Query: 4 GGESGVFEDSRTVEHYTVDAGGLLEEVDADGRDQDMADRRCWAEEEILPDVFAATAAFGE 63
GG+ V ED R V H VDA + E +DA D+ D R + E+LP A +
Sbjct: 127 GGDPSVPEDGRAVVHQRVDASDMREALDAKAGDEHPGDHRRGSR-ELLPHRLVAVLS--- 186
Query: 64 MDDVVGAMGRDSGSLFDVGEAELGFVRGVGGTKENGSGVGEAALHDEPARRFGHEENDEN 123
G GR G D+GE G V VG +E+G+G+ + LHD+P+RR E E+
Sbjct: 187 -----GVRGRGGG--LDLGEPLFGLVLAVGDLEEHGAGLVGSVLHDKPSRRLRDHEQRED 246
Query: 124 EESRGEDADSEHESPSQVSG 143
+ EDAD EH++P V G
Sbjct: 247 DGDGREDADGEHDAPVNVVG 255
BLAST of Csor.00g260210 vs. NCBI nr
Match:
OAY66367.1 (hypothetical protein ACMD2_13915, partial [Ananas comosus])
HSP 1 Score: 59.3 bits (142), Expect = 4.95e-07
Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = 0
Query: 4 GGESGVFEDSRTVEHYTVDAGGLLEEVDADGRDQDMADRRCWAEEEILPDVFAATAAFGE 63
G ++G+ E +R V+H+ VDA LLEE+ +GR QD RR +++ P A A
Sbjct: 247 GADAGLLEHARAVQHHRVDARRLLEELQPEGRQQDPPHRRRRPHQQLPPHPLPAPA---- 306
Query: 64 MDDVVGAMGRDSGSLFDVGEAELGFVRGVGGTKENGSGVGEAALHDEPARRFGHEENDEN 123
+ + +LF + LG V GG E+ + + EAALHDEPA H E+
Sbjct: 307 -------LRVLAQALFYL--LSLGLVGAAGGLGEHAARIVEAALHDEPAGGLRHGEHSGA 366
Query: 124 EESRGEDADSEHESPSQVSG 143
EE + A EH +P++ G
Sbjct: 367 EEDGRDGAGEEHGAPAEAEG 373
BLAST of Csor.00g260210 vs. ExPASy TrEMBL
Match:
T1LJI6 (Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1)
HSP 1 Score: 89.7 bits (221), Expect = 3.14e-18
Identity = 60/142 (42.25%), Postives = 84/142 (59.15%), Query Frame = 0
Query: 1 MVGGGESGVFEDSRTVEHYTVDAGGLLEEVDADGRDQDMADRRCWAEEEILPDVFAATA- 60
+V G++G E + VEH V A LLEE+DA+ R+Q A R ++E+LP + TA
Sbjct: 182 VVVAGDAGALEHAWAVEHDRVGASRLLEEMDAERREQYAAHDRGGRKDELLPHLLLVTAF 241
Query: 61 AFGEMDDVVGAMGRDSGSLFDVGEAELGFVRGVGGTKENGSGVGEAALHDEPARRFGHEE 120
+ G D V + D+G D+ +A G + VGG E+ GVGEAALHDEP R H E
Sbjct: 242 SLGHGDHVAVKVAGDAGGRLDLVKALHGLLWRVGGLLEHDPGVGEAALHDEPPGRLRHAE 301
Query: 121 NDENEESRGEDADSEHESPSQV 141
+ E E+ RG+ AD+EH++P V
Sbjct: 302 HHEREQGRGDGADAEHDAPVDV 323
BLAST of Csor.00g260210 vs. ExPASy TrEMBL
Match:
A0A5A7QD07 (NF-X-like 1 (Fragment) OS=Striga asiatica OX=4170 GN=STAS_19025 PE=4 SV=1)
HSP 1 Score: 77.8 bits (190), Expect = 3.95e-14
Identity = 58/136 (42.65%), Postives = 75/136 (55.15%), Query Frame = 0
Query: 6 ESGVFEDSRTVEHYTVDAGGLLEEVDADGRDQDMADRRCWAEEEILPDVFAATAAFGEMD 65
+ G+ E R VE Y VDA LLE+VDA+ D+ D AE E+ P A A G D
Sbjct: 176 DPGLLEYGRAVEDYGVDAADLLEDVDAERAHGDVEDDGGRAE-EVAPHTLAVVGARGGDD 235
Query: 66 DVV---GAMGRDSGSLFDVGEAELGFVRGVGGTKENGSGVGEAALHDEPARRFGHEENDE 125
DVV +G +G LFDV E E F GVGG E+ +G+AALHDEP H+E +
Sbjct: 236 DVVVVVAVLGY-AGRLFDVVETEERFFGGVGGLVEDALRLGDAALHDEPTGGLRHDERAD 295
Query: 126 NEESRGEDADSEHESP 138
++ +D D+EHE P
Sbjct: 296 DDADGRDDPDAEHEPP 309
BLAST of Csor.00g260210 vs. ExPASy TrEMBL
Match:
A0A0P0VUA0 (Os03g0197175 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0197175 PE=4 SV=1)
HSP 1 Score: 73.2 bits (178), Expect = 1.89e-12
Identity = 55/127 (43.31%), Postives = 71/127 (55.91%), Query Frame = 0
Query: 4 GGESGVFEDSRTVEHYTVDAGGLLEEVDADGRDQDMADRRCWAEEEILPDVFAATAAFGE 63
G E+ V E R V+H VDAGGLLEE++A+ D+ A R AE+++ PD A A
Sbjct: 176 GVEARVVEHPRAVQHDGVDAGGLLEELEAEAGDEYAAHGRRRAEQQVPPDTLAVGAP-AL 235
Query: 64 MDD-----VVGAMGRDSGSLFDVGEAELGFVRGVGGTKENGSGVGEAALHDEPARRFGHE 123
+DD +VG D+ + DV E LG R VGG E+ S V +A LHDEP RR H
Sbjct: 236 VDDGYNFVLVGDPFGDADRVLDVREPLLGLGRRVGGLLEDTSRVADAPLHDEPPRRLRHG 295
Query: 124 ENDENEE 125
E+ EE
Sbjct: 296 EDAHGEE 301
BLAST of Csor.00g260210 vs. ExPASy TrEMBL
Match:
A0A199UNE9 (Uncharacterized protein (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_13915 PE=4 SV=1)
HSP 1 Score: 59.3 bits (142), Expect = 2.40e-07
Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = 0
Query: 4 GGESGVFEDSRTVEHYTVDAGGLLEEVDADGRDQDMADRRCWAEEEILPDVFAATAAFGE 63
G ++G+ E +R V+H+ VDA LLEE+ +GR QD RR +++ P A A
Sbjct: 247 GADAGLLEHARAVQHHRVDARRLLEELQPEGRQQDPPHRRRRPHQQLPPHPLPAPA---- 306
Query: 64 MDDVVGAMGRDSGSLFDVGEAELGFVRGVGGTKENGSGVGEAALHDEPARRFGHEENDEN 123
+ + +LF + LG V GG E+ + + EAALHDEPA H E+
Sbjct: 307 -------LRVLAQALFYL--LSLGLVGAAGGLGEHAARIVEAALHDEPAGGLRHGEHSGA 366
Query: 124 EESRGEDADSEHESPSQVSG 143
EE + A EH +P++ G
Sbjct: 367 EEDGRDGAGEEHGAPAEAEG 373
BLAST of Csor.00g260210 vs. ExPASy TrEMBL
Match:
A0A199VWV7 (Uncharacterized protein (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_21233 PE=4 SV=1)
HSP 1 Score: 59.3 bits (142), Expect = 2.42e-07
Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = 0
Query: 4 GGESGVFEDSRTVEHYTVDAGGLLEEVDADGRDQDMADRRCWAEEEILPDVFAATAAFGE 63
G ++G+ E +R V+H+ VDA LLEE+ +GR QD RR +++ P A A
Sbjct: 276 GADAGLLEHARAVQHHRVDARRLLEELQPEGRQQDPPHRRRRPHQQLPPHPLPAPA---- 335
Query: 64 MDDVVGAMGRDSGSLFDVGEAELGFVRGVGGTKENGSGVGEAALHDEPARRFGHEENDEN 123
+ + +LF + LG V GG E+ + + EAALHDEPA H E+
Sbjct: 336 -------LRVLAQALFYL--LSLGLVGAAGGLGEHAARIVEAALHDEPAGGLRHGEHAGG 395
Query: 124 EESRGEDADSEHESPSQVSG 143
EE + A EH +P++ G
Sbjct: 396 EEDGRDGAGEEHGAPAEAEG 402
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6588614.1 | 4.40e-93 | 100.00 | hypothetical protein SDJN03_17179, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
GER42247.1 | 8.16e-14 | 42.65 | NF-X-like 1, partial [Striga asiatica] | [more] |
KAB8090643.1 | 3.91e-12 | 43.31 | hypothetical protein EE612_015901, partial [Oryza sativa] >BAS82780.1 Os03g01971... | [more] |
CAB3505007.1 | 1.20e-09 | 37.14 | unnamed protein product [Digitaria exilis] | [more] |
OAY66367.1 | 4.95e-07 | 34.29 | hypothetical protein ACMD2_13915, partial [Ananas comosus] | [more] |
Match Name | E-value | Identity | Description | |
T1LJI6 | 3.14e-18 | 42.25 | Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1 | [more] |
A0A5A7QD07 | 3.95e-14 | 42.65 | NF-X-like 1 (Fragment) OS=Striga asiatica OX=4170 GN=STAS_19025 PE=4 SV=1 | [more] |
A0A0P0VUA0 | 1.89e-12 | 43.31 | Os03g0197175 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os03... | [more] |
A0A199UNE9 | 2.40e-07 | 34.29 | Uncharacterized protein (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_13915 PE=4... | [more] |
A0A199VWV7 | 2.42e-07 | 34.29 | Uncharacterized protein (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_21233 PE=4... | [more] |
Match Name | E-value | Identity | Description | |