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Csor.00g260090 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTATGATGGATGTCACACAAAAGGTTGGTTTCACAGCGCTTCATACTAATCTAATCCCCTCTTCTCTGTTTTCCACAACTGAGGGAGCAATCATTACATTAATTCCACTTCTCTTCTTCAGGGGCTGTTGCTGAGGACCCAACTCCAGGACCAGACCAACAAATGCTGTGTTGATTGCAACACTACCAAGACTCCTTTGTGGCGTGGAGGCCCTGCTGGTCCTAAGGTTTCTCTTATCGCCCTTTTTCTTCTTTTTCCCTCTGTTTTCATCTTCTGTTTCATCTTCAGCTTCTTCTTAGTATGTCAGATTCATGGTTTCTTTCTGATTATTCATTTCTTCTGGGTTTTTTTTTTCGTATCCAATATCGTTTTAGCTTTCTGTTCTGTTTCTGGTTATGTTCTTCTTAATTCTTGAAACTGGGTTTCTACTCTGTTCATGTACCTGTTCTTCTTCGATCATTTTGTTTGATTTCTACTCTGTTCTGTTTCAGATTCATGGTTTGTTTGATTTTTAGCTTCTGATATGGATTCATGTCCGTCTTTGGTTCTATTTGTATTGGGTTTCTCCACTATCTATCAAACCTATCTACCCGTTTCCGCAATTGTTCTTAATGTTCATCTATTTTCTCATCAATACATTCATAGTTCTCTCTAGTTTTTTTTCTACTTATCCCTCGTATTTAGCTTCTAAAGAATGAAAAACTCAAAAAGAAAAACCTCTGTTCCCCTATATGGGATTTTTGCAGTCACTGTGTAACGCATGTGGGATCAGGTTTAGAAAGAGAAGAATATCCACAAACAGAGGATATGTGAGGAAGAAGGAGAGACCTCATAGCTCCACCGCGATGGGGGCAGTGTCAGCCACCACTTCTTCTTCCAGTGGCACAACGGCCATCAATACCACCACCAGCGGTGGCGGTAGTGGAGATGGGGAGGAGGATTTGGGGGAATGTAGGTCATTGAGGATGAGGGTGATGATGCCCTTCAGGGAGGAGGTGGTGGTGGTGCAGAATGCGTCATCGGTTCAGAAACAGGGGAAGCTTGGGGAGGAGGAGCAGGCGGCGGTGCTGTTAATGGCGCTGTCTTGTGGTTCTGTGTTCGCCTGA ATGGGTATGATGGATGTCACACAAAAGGGGCTGTTGCTGAGGACCCAACTCCAGGACCAGACCAACAAATGCTGTGTTGATTGCAACACTACCAAGACTCCTTTGTGGCGTGGAGGCCCTGCTGGTCCTAAGTCACTGTGTAACGCATGTGGGATCAGGTTTAGAAAGAGAAGAATATCCACAAACAGAGGATATGTGAGGAAGAAGGAGAGACCTCATAGCTCCACCGCGATGGGGGCAGTGTCAGCCACCACTTCTTCTTCCAGTGGCACAACGGCCATCAATACCACCACCAGCGGTGGCGGTAGTGGAGATGGGGAGGAGGATTTGGGGGAATGTAGGTCATTGAGGATGAGGGTGATGATGCCCTTCAGGGAGGAGGTGGTGGTGGTGCAGAATGCGTCATCGGTTCAGAAACAGGGGAAGCTTGGGGAGGAGGAGCAGGCGGCGGTGCTGTTAATGGCGCTGTCTTGTGGTTCTGTGTTCGCCTGA ATGGGTATGATGGATGTCACACAAAAGGGGCTGTTGCTGAGGACCCAACTCCAGGACCAGACCAACAAATGCTGTGTTGATTGCAACACTACCAAGACTCCTTTGTGGCGTGGAGGCCCTGCTGGTCCTAAGTCACTGTGTAACGCATGTGGGATCAGGTTTAGAAAGAGAAGAATATCCACAAACAGAGGATATGTGAGGAAGAAGGAGAGACCTCATAGCTCCACCGCGATGGGGGCAGTGTCAGCCACCACTTCTTCTTCCAGTGGCACAACGGCCATCAATACCACCACCAGCGGTGGCGGTAGTGGAGATGGGGAGGAGGATTTGGGGGAATGTAGGTCATTGAGGATGAGGGTGATGATGCCCTTCAGGGAGGAGGTGGTGGTGGTGCAGAATGCGTCATCGGTTCAGAAACAGGGGAAGCTTGGGGAGGAGGAGCAGGCGGCGGTGCTGTTAATGGCGCTGTCTTGTGGTTCTGTGTTCGCCTGA MGMMDVTQKGLLLRTQLQDQTNKCCVDCNTTKTPLWRGGPAGPKSLCNACGIRFRKRRISTNRGYVRKKERPHSSTAMGAVSATTSSSSGTTAINTTTSGGGSGDGEEDLGECRSLRMRVMMPFREEVVVVQNASSVQKQGKLGEEEQAAVLLMALSCGSVFA Homology
BLAST of Csor.00g260090 vs. ExPASy Swiss-Prot
Match: Q9FJ10 (GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 6.5e-18 Identity = 73/177 (41.24%), Postives = 90/177 (50.85%), Query Frame = 0
BLAST of Csor.00g260090 vs. ExPASy Swiss-Prot
Match: Q8LG10 (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2) HSP 1 Score: 89.4 bits (220), Expect = 4.2e-17 Identity = 60/144 (41.67%), Postives = 78/144 (54.17%), Query Frame = 0
BLAST of Csor.00g260090 vs. ExPASy Swiss-Prot
Match: Q9LIB5 (GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 2.3e-15 Identity = 61/158 (38.61%), Postives = 80/158 (50.63%), Query Frame = 0
BLAST of Csor.00g260090 vs. ExPASy Swiss-Prot
Match: Q8LC59 (GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2) HSP 1 Score: 78.6 bits (192), Expect = 7.4e-14 Identity = 55/151 (36.42%), Postives = 70/151 (46.36%), Query Frame = 0
BLAST of Csor.00g260090 vs. ExPASy Swiss-Prot
Match: Q6YW48 (Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CGA1 PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 3.4e-11 Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0
BLAST of Csor.00g260090 vs. NCBI nr
Match: KAG6588601.1 (GATA transcription factor 16, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 316 bits (810), Expect = 1.35e-108 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
BLAST of Csor.00g260090 vs. NCBI nr
Match: XP_022931670.1 (GATA transcription factor 16-like [Cucurbita moschata]) HSP 1 Score: 312 bits (799), Expect = 6.45e-107 Identity = 161/163 (98.77%), Postives = 163/163 (100.00%), Query Frame = 0
BLAST of Csor.00g260090 vs. NCBI nr
Match: XP_023530140.1 (GATA transcription factor 16-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 300 bits (767), Expect = 5.61e-102 Identity = 160/167 (95.81%), Postives = 160/167 (95.81%), Query Frame = 0
BLAST of Csor.00g260090 vs. NCBI nr
Match: XP_022989484.1 (GATA transcription factor 16-like [Cucurbita maxima]) HSP 1 Score: 286 bits (731), Expect = 1.22e-96 Identity = 149/163 (91.41%), Postives = 152/163 (93.25%), Query Frame = 0
BLAST of Csor.00g260090 vs. NCBI nr
Match: XP_038880207.1 (GATA transcription factor 17-like [Benincasa hispida]) HSP 1 Score: 190 bits (483), Expect = 1.83e-58 Identity = 119/173 (68.79%), Postives = 128/173 (73.99%), Query Frame = 0
BLAST of Csor.00g260090 vs. ExPASy TrEMBL
Match: A0A6J1F048 (GATA transcription factor 16-like OS=Cucurbita moschata OX=3662 GN=LOC111437809 PE=4 SV=1) HSP 1 Score: 312 bits (799), Expect = 3.12e-107 Identity = 161/163 (98.77%), Postives = 163/163 (100.00%), Query Frame = 0
BLAST of Csor.00g260090 vs. ExPASy TrEMBL
Match: A0A6J1JPG4 (GATA transcription factor 16-like OS=Cucurbita maxima OX=3661 GN=LOC111486528 PE=4 SV=1) HSP 1 Score: 286 bits (731), Expect = 5.93e-97 Identity = 149/163 (91.41%), Postives = 152/163 (93.25%), Query Frame = 0
BLAST of Csor.00g260090 vs. ExPASy TrEMBL
Match: A0A6J1C1I3 (GATA transcription factor 16-like isoform X4 OS=Momordica charantia OX=3673 GN=LOC111007526 PE=4 SV=1) HSP 1 Score: 179 bits (455), Expect = 8.40e-55 Identity = 108/169 (63.91%), Postives = 125/169 (73.96%), Query Frame = 0
BLAST of Csor.00g260090 vs. ExPASy TrEMBL
Match: A0A6J1C1Y1 (GATA transcription factor 16-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111007526 PE=4 SV=1) HSP 1 Score: 179 bits (454), Expect = 1.23e-54 Identity = 108/169 (63.91%), Postives = 125/169 (73.96%), Query Frame = 0
BLAST of Csor.00g260090 vs. ExPASy TrEMBL
Match: A0A6J1C5A4 (GATA transcription factor 17-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007526 PE=4 SV=1) HSP 1 Score: 179 bits (455), Expect = 4.52e-54 Identity = 108/169 (63.91%), Postives = 125/169 (73.96%), Query Frame = 0
BLAST of Csor.00g260090 vs. TAIR 10
Match: AT5G49300.1 (GATA transcription factor 16 ) HSP 1 Score: 92.0 bits (227), Expect = 4.6e-19 Identity = 73/177 (41.24%), Postives = 90/177 (50.85%), Query Frame = 0
BLAST of Csor.00g260090 vs. TAIR 10
Match: AT3G06740.1 (GATA transcription factor 15 ) HSP 1 Score: 89.4 bits (220), Expect = 3.0e-18 Identity = 60/144 (41.67%), Postives = 78/144 (54.17%), Query Frame = 0
BLAST of Csor.00g260090 vs. TAIR 10
Match: AT3G16870.1 (GATA transcription factor 17 ) HSP 1 Score: 83.6 bits (205), Expect = 1.6e-16 Identity = 61/158 (38.61%), Postives = 80/158 (50.63%), Query Frame = 0
BLAST of Csor.00g260090 vs. TAIR 10
Match: AT4G16141.1 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 79.0 bits (193), Expect = 4.0e-15 Identity = 59/166 (35.54%), Postives = 83/166 (50.00%), Query Frame = 0
BLAST of Csor.00g260090 vs. TAIR 10
Match: AT5G26930.1 (GATA transcription factor 23 ) HSP 1 Score: 78.6 bits (192), Expect = 5.3e-15 Identity = 55/151 (36.42%), Postives = 70/151 (46.36%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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