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Csor.00g173650 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCCGTTTGCCGATCAGTTCTCACAGCGACGGGTTCAAGGCCCATGGCCGGCCGGACCAGAACACTGCTTCGTAAAACCTTGAATCCAATGCCTGAGTCTTCTTCCTCCAAAGGTCTCACTTCCGTTTCCAGGTATTTTTACTTCAAATTCTGCAATTTCATTCAGTCGTTGACGTGCTGGAATTTCTTTGCAATCTGTTAATTTACTGTATTTGAACTTTTTCGGATCTTGAAAATACTTGATTTGCTTCCATTTTTCATCGGTCGTACTTTATTTTACTCTAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCTCTGATGCCACTCCATAGCGCCGTCGCCTCAGCTCGGTTGAAGTCCAAAATTGCCGTCGATTCGCATTGCTGGAGCTGGCTTTCTGAAGGTTTTTTATTCGCCGTTTCTCTATATAAGCTGTTCTTATAATTATGTGCATTTCCTTCCACGATACGGAGAGGATTTTTGTTCATATGATTTCGGATCTTGTTTTGTTAACTCTCTGTTATGTTCTCGATGTGCTACAACGCTTCTATCAAGAAATTTTGCAATATTGTTGCTCTTTCCCAGTTTTATCTCTTAAAGGAAGTGGAAGAAGTTCGGCAATGGTCTTCTTACCTGCATAG ATGGCTTCCGTTTGCCGATCAGTTCTCACAGCGACGGGTTCAAGGCCCATGGCCGGCCGGACCAGAACACTGCTTCGTAAAACCTTGAATCCAATGCCTGAGTCTTCTTCCTCCAAAGGTCTCACTTCCGTTTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCTCTGATGCCACTCCATAGCGCCGTCGCCTCAGCTCGGTTGAAGTCCAAAATTGCCGTCGATTCGCATTGCTGGAGCTGGCTTTCTGAAGTTTTATCTCTTAAAGGAAGTGGAAGAAGTTCGGCAATGGTCTTCTTACCTGCATAG ATGGCTTCCGTTTGCCGATCAGTTCTCACAGCGACGGGTTCAAGGCCCATGGCCGGCCGGACCAGAACACTGCTTCGTAAAACCTTGAATCCAATGCCTGAGTCTTCTTCCTCCAAAGGTCTCACTTCCGTTTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCTCTGATGCCACTCCATAGCGCCGTCGCCTCAGCTCGGTTGAAGTCCAAAATTGCCGTCGATTCGCATTGCTGGAGCTGGCTTTCTGAAGTTTTATCTCTTAAAGGAAGTGGAAGAAGTTCGGCAATGGTCTTCTTACCTGCATAG MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEVLSLKGSGRSSAMVFLPA Homology
BLAST of Csor.00g173650 vs. NCBI nr
Match: KAG6588438.1 (hypothetical protein SDJN03_17003, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 193 bits (490), Expect = 9.98e-62 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Csor.00g173650 vs. NCBI nr
Match: KAG7022286.1 (hypothetical protein SDJN02_16017, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 160 bits (404), Expect = 8.00e-49 Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0
BLAST of Csor.00g173650 vs. NCBI nr
Match: XP_023531748.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 155 bits (393), Expect = 4.30e-47 Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 0
BLAST of Csor.00g173650 vs. NCBI nr
Match: XP_022933658.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like [Cucurbita moschata]) HSP 1 Score: 146 bits (369), Expect = 1.96e-43 Identity = 78/85 (91.76%), Postives = 82/85 (96.47%), Query Frame = 0
BLAST of Csor.00g173650 vs. NCBI nr
Match: XP_022136047.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica charantia]) HSP 1 Score: 135 bits (340), Expect = 5.32e-39 Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 0
BLAST of Csor.00g173650 vs. ExPASy TrEMBL
Match: A0A6J1F5F6 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111441012 PE=4 SV=1) HSP 1 Score: 146 bits (369), Expect = 9.50e-44 Identity = 78/85 (91.76%), Postives = 82/85 (96.47%), Query Frame = 0
BLAST of Csor.00g173650 vs. ExPASy TrEMBL
Match: A0A6J1C4G8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007834 PE=4 SV=1) HSP 1 Score: 135 bits (340), Expect = 2.58e-39 Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 0
BLAST of Csor.00g173650 vs. ExPASy TrEMBL
Match: A0A6J1GKU0 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111454867 PE=4 SV=1) HSP 1 Score: 124 bits (310), Expect = 1.02e-34 Identity = 68/88 (77.27%), Postives = 74/88 (84.09%), Query Frame = 0
BLAST of Csor.00g173650 vs. ExPASy TrEMBL
Match: A0A6J1I675 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471072 PE=4 SV=1) HSP 1 Score: 122 bits (307), Expect = 2.83e-34 Identity = 68/87 (78.16%), Postives = 73/87 (83.91%), Query Frame = 0
BLAST of Csor.00g173650 vs. ExPASy TrEMBL
Match: A0A5D3BYV0 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2392G00150 PE=4 SV=1) HSP 1 Score: 117 bits (293), Expect = 3.73e-32 Identity = 66/86 (76.74%), Postives = 72/86 (83.72%), Query Frame = 0
BLAST of Csor.00g173650 vs. TAIR 10
Match: AT4G39300.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11630.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15 Identity = 48/95 (50.53%), Postives = 67/95 (70.53%), Query Frame = 0
BLAST of Csor.00g173650 vs. TAIR 10
Match: AT4G39300.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 79.7 bits (195), Expect = 1.5e-15 Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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