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Csor.00g173590 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAGATCAAGGAAACAACATGATGGCTTTTGATATGAGTTCTCTTGGGGCAAATCTTCCTCAAAAGTAAGCAATTTTGGCCTACTTTTTTTTGTTAGTTTAATACTTGTTTTACGTCGTTTTGAATGTATAATTACGAGATAGTAGGTTCGGGTTTTTCAATTTTGTTGTGTGACTATCGTGCAAGCATCATGTCGGAACGTTTAAAAAAAAACGATGTGATATCTCACATTGGTTGAGGAGAGAACGAAACACCCTTCATAAGGGTGTAGAAACCTTTCCCTAACATACTCGTAATGGAGAAGTCGATAAGGGAAACCCCAAAACCCTTGAGGGGGAAGCTCGAAAGGGAAATCCCAAAAAGGATAGTATCTGGATGAACACCGATTCCACTGTATAACTCTGAAAGACACGTTTTTAAAGGTTTGAGGGTAAGCTCGAAAGGAAATTTTACATTACAAACATAATCTTCCTTTCACGTGGGTAATGAGAAACATAGCCAACGTAGATTACAGTCTTTTTACTATCGTATTTGCATACTCCTCTCGTAACTATTTTCTTTTTGGTTTCCTTTTACGTGGGTAATGAGAAACACAGCCAACGTAGATTACCGTCTTTTTAGTATCGTATTTGCATACTCCTCTCATAACTATTTTTTTTTTTTTTTTTTTTTATATATATATATTTCAAAACTATTTATATATATGACCCAATAACCCGAACTACCTAGATCACCCAATCAAACCCTAAAAATTAAGTTGGGTTAGCTTTTTTTCCTTTTTTCTTTTTTTCCCGGGGTTGGATTAAATTTTTGAAAAACTAAAAAATTCAGTTCGGTTTGTGGGTTAACTTTTTTTTGATTGAGTTAACTCGACCCACTCGAAAATAAGGTTACAACCCAACTCAACCCTATTTTTACGGAAGCGAAAAATATTTAACATTTGTAATCGATGTTAGTGAGACTTGTAAATATTTGATATTTGAATGGGTTGTATAGCTGACGTTGTGGAGTTGGAGTATAGGAGGGGATTGTCGAGGTACTATTCAGGAAAGGCGAGGTCGTTTGCTTGCATAGCGGATGCTCGATGTGTAGAAGACTTGAAGAAACCAACACATCCAGATGCGAAGAAAAGGAAGAAACATTCTGATTGCAAAGGAATTCATGTTTCTCCTCATCACTGTCGACGAGCTTCATCCACTCATTGTTCTATTCCCTTCTTTGCTTCATGA ATGAAAGATCAAGGAAACAACATGATGGCTTTTGATATGAGTTCTCTTGGGGCAAATCTTCCTCAAAAGAGGGGATTGTCGAGGTACTATTCAGGAAAGGCGAGGTCGTTTGCTTGCATAGCGGATGCTCGATGTGTAGAAGACTTGAAGAAACCAACACATCCAGATGCGAAGAAAAGGAAGAAACATTCTGATTGCAAAGGAATTCATGTTTCTCCTCATCACTGTCGACGAGCTTCATCCACTCATTGTTCTATTCCCTTCTTTGCTTCATGA ATGAAAGATCAAGGAAACAACATGATGGCTTTTGATATGAGTTCTCTTGGGGCAAATCTTCCTCAAAAGAGGGGATTGTCGAGGTACTATTCAGGAAAGGCGAGGTCGTTTGCTTGCATAGCGGATGCTCGATGTGTAGAAGACTTGAAGAAACCAACACATCCAGATGCGAAGAAAAGGAAGAAACATTCTGATTGCAAAGGAATTCATGTTTCTCCTCATCACTGTCGACGAGCTTCATCCACTCATTGTTCTATTCCCTTCTTTGCTTCATGA MKDQGNNMMAFDMSSLGANLPQKRGLSRYYSGKARSFACIADARCVEDLKKPTHPDAKKRKKHSDCKGIHVSPHHCRRASSTHCSIPFFAS Homology
BLAST of Csor.00g173590 vs. NCBI nr
Match: KAG6588432.1 (hypothetical protein SDJN03_16997, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 192 bits (487), Expect = 1.19e-61 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of Csor.00g173590 vs. NCBI nr
Match: KAG7022280.1 (hypothetical protein SDJN02_16011, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 148 bits (373), Expect = 2.65e-42 Identity = 71/79 (89.87%), Postives = 72/79 (91.14%), Query Frame = 0
BLAST of Csor.00g173590 vs. NCBI nr
Match: KGN43154.1 (hypothetical protein Csa_020555 [Cucumis sativus]) HSP 1 Score: 141 bits (355), Expect = 1.69e-41 Identity = 72/93 (77.42%), Postives = 78/93 (83.87%), Query Frame = 0
BLAST of Csor.00g173590 vs. NCBI nr
Match: KAA0033797.1 (hypothetical protein E6C27_scaffold142G00550 [Cucumis melo var. makuwa] >TYK22337.1 hypothetical protein E5676_scaffold1428G00540 [Cucumis melo var. makuwa]) HSP 1 Score: 137 bits (344), Expect = 6.36e-40 Identity = 70/85 (82.35%), Postives = 73/85 (85.88%), Query Frame = 0
BLAST of Csor.00g173590 vs. NCBI nr
Match: KAG6572054.1 (hypothetical protein SDJN03_28782, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011720.1 hypothetical protein SDJN02_26626, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 115 bits (289), Expect = 1.69e-31 Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 0
BLAST of Csor.00g173590 vs. ExPASy TrEMBL
Match: A0A0A0K2B1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004070 PE=4 SV=1) HSP 1 Score: 141 bits (355), Expect = 8.20e-42 Identity = 72/93 (77.42%), Postives = 78/93 (83.87%), Query Frame = 0
BLAST of Csor.00g173590 vs. ExPASy TrEMBL
Match: A0A5A7SX13 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00540 PE=4 SV=1) HSP 1 Score: 137 bits (344), Expect = 3.08e-40 Identity = 70/85 (82.35%), Postives = 73/85 (85.88%), Query Frame = 0
BLAST of Csor.00g173590 vs. ExPASy TrEMBL
Match: A0A061E0R1 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_006830 PE=4 SV=1) HSP 1 Score: 114 bits (285), Expect = 3.84e-31 Identity = 61/89 (68.54%), Postives = 71/89 (79.78%), Query Frame = 0
BLAST of Csor.00g173590 vs. ExPASy TrEMBL
Match: A0A6A1V3M6 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR7G011640 PE=4 SV=1) HSP 1 Score: 111 bits (277), Expect = 6.92e-30 Identity = 55/90 (61.11%), Postives = 67/90 (74.44%), Query Frame = 0
BLAST of Csor.00g173590 vs. ExPASy TrEMBL
Match: A0A6M2EP42 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1) HSP 1 Score: 112 bits (280), Expect = 9.16e-30 Identity = 59/89 (66.29%), Postives = 70/89 (78.65%), Query Frame = 0
BLAST of Csor.00g173590 vs. TAIR 10
Match: AT3G03170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24890.1); Has 184 Blast hits to 184 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.0 bits (110), Expect = 9.5e-06 Identity = 28/69 (40.58%), Postives = 40/69 (57.97%), Query Frame = 0
BLAST of Csor.00g173590 vs. TAIR 10
Match: AT5G56550.1 (oxidative stress 3 ) HSP 1 Score: 45.1 bits (105), Expect = 3.6e-05 Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 0
BLAST of Csor.00g173590 vs. TAIR 10
Match: AT5G24890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 43.9 bits (102), Expect = 8.0e-05 Identity = 21/49 (42.86%), Postives = 33/49 (67.35%), Query Frame = 0
BLAST of Csor.00g173590 vs. TAIR 10
Match: AT5G21940.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 41.2 bits (95), Expect = 5.2e-04 Identity = 20/57 (35.09%), Postives = 36/57 (63.16%), Query Frame = 0
BLAST of Csor.00g173590 vs. TAIR 10
Match: AT4G31510.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 205 Blast hits to 205 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 3; Plants - 187; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 40.4 bits (93), Expect = 8.9e-04 Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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