Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDS single polypeptide start_codon stop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATG AATGAATTTGTGGCCGAGTTCAAGAATAGTGAAGGATCAGAGAAAGAAGCCGATAGGCGAAGGAGCGAAGCAGAGGTGACGCTTTCTTCTTTTACCGAGTTCAATCTGGTTCAGGACTTGATTCGAGACTCCAGGCCAGGACAGAACGGAAGGAAGATGAATGAACCTATTTACCAAGTCTTTGAGAAGAAAAAGAATAAATCAAATAGGTGGGTGAAGGAAAGAACAGAAAAGAAAGAGACCGTAAAGGAAAAGGAGGTGACGGTGAGGGATCGGTTACGGAGCGAAGCGAAGCAATGA mRNA sequence
ATGAATGAATTTGTGGCCGAGTTCAAGAATAGTGAAGGATCAGAGAAAGAAGCCGATAGGCGAAGGAGCGAAGCAGAGGTGACGCTTTCTTCTTTTACCGAGTTCAATCTGGTTCAGGACTTGATTCGAGACTCCAGGCCAGGACAGAACGGAAGGAAGATGAATGAACCTATTTACCAAGTCTTTGAGAAGAAAAAGAATAAATCAAATAGGTGGGTGAAGGAAAGAACAGAAAAGAAAGAGACCGTAAAGGAAAAGGAGGTGACGGTGAGGGATCGGTTACGGAGCGAAGCGAAGCAATGA Coding sequence (CDS)
ATGAATGAATTTGTGGCCGAGTTCAAGAATAGTGAAGGATCAGAGAAAGAAGCCGATAGGCGAAGGAGCGAAGCAGAGGTGACGCTTTCTTCTTTTACCGAGTTCAATCTGGTTCAGGACTTGATTCGAGACTCCAGGCCAGGACAGAACGGAAGGAAGATGAATGAACCTATTTACCAAGTCTTTGAGAAGAAAAAGAATAAATCAAATAGGTGGGTGAAGGAAAGAACAGAAAAGAAAGAGACCGTAAAGGAAAAGGAGGTGACGGTGAGGGATCGGTTACGGAGCGAAGCGAAGCAATGA Protein sequence
MNEFVAEFKNSEGSEKEADRRRSEAEVTLSSFTEFNLVQDLIRDSRPGQNGRKMNEPIYQVFEKKKNKSNRWVKERTEKKETVKEKEVTVRDRLRSEAKQ
Homology
BLAST of Csor.00g159250 vs. NCBI nr
Match:
KAG6583630.1 (hypothetical protein SDJN03_19562, partial [Cucurbita argyrosperma subsp. sororia] >KAG6588534.1 hypothetical protein SDJN03_17099, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 186 bits (472), Expect = 4.47e-59
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
Query: 1 MNEFVAEFKNSEGSEKEADRRRSEAEVTLSSFTEFNLVQDLIRDSRPGQNGRKMNEPIYQ 60 MNEFVAEFKNSEGSEKEADRRRSEAEVTLSSFTEFNLVQDLIRDSRPGQNGRKMNEPIYQ Sbjct: 1 MNEFVAEFKNSEGSEKEADRRRSEAEVTLSSFTEFNLVQDLIRDSRPGQNGRKMNEPIYQ 60 Query: 61 VFEKKKNKSNRWVKERTEKKETVKEKEVTVRDRLRSEAKQ 100 VFEKKKNKSNRWVKERTEKKETVKEKEVTVRDRLRSEAKQ Sbjct: 61 VFEKKKNKSNRWVKERTEKKETVKEKEVTVRDRLRSEAKQ 100
BLAST of Csor.00g159250 vs. NCBI nr
Match:
KAG6603418.1 (hypothetical protein SDJN03_04027, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 173 bits (438), Expect = 6.87e-54
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 0
Query: 1 MNEFVAEFKNSEGSEKEADRRRSEAEVTLSSFTEFNLVQDLIRDSRPGQNGRKMNEPIYQ 60 MNE VAEFKNSE EKEADRRRSEAEVT+SSFTEFNLV+DLIRDSRPGQNGRKMNEPIYQ Sbjct: 1 MNELVAEFKNSEEEEKEADRRRSEAEVTVSSFTEFNLVKDLIRDSRPGQNGRKMNEPIYQ 60 Query: 61 VFEKKKNKSNRWVKERTEKKETVKEKEVTVRDRLRSEAKQ 100 VFEKKKN SNRWVKERTEKKETVKEKEVTV+DRLRSEAKQ Sbjct: 61 VFEKKKNNSNRWVKERTEKKETVKEKEVTVQDRLRSEAKQ 100
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
KAG6583630.1 4.47e-59 100.00 hypothetical protein SDJN03_19562, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603418.1 6.87e-54 93.00 hypothetical protein SDJN03_04027, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
A T G A A T G A A T T T G T G G C C G A G T T C A A G A A T A G T G A A G G A T C A G A G A A A G A A G C C G A T A G G C G A A G G A G C G A A G C A G A G G T G A C G C T T T C T T C T T T T A C C G A G T T C A A T C T G G T T C A G G A C T T G A T T C G A G A C T C C A G G C C A G G A C A G A A C G G A A G G A A G A T G A A T G A A C C T A T T T A C C A A G T C T T T G A G A A G A A A A A G A A T A A A T C A A A T A G G T G G G T G A A G G A A A G A A C A G A A A A G A A A G A G A C C G T A A A G G A A A A G G A G G T G A C G G T G A G G G A T C G G T T A C G G A G C G A A G C G A A G C A A T G A 50 100 150 200 250 300 Score = Score = Score = Sequence mobidb-lite mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 70..100
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 9..23
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..23
Relationships
The following mRNA feature(s) are a part of this gene: