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Csor.00g078420 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTACCTTTCAGTCGGTATAGTGTCTTTTGCTTCCCTTACTCCACTCTTTTCTCCTTCCTTCGTTCCTAGCCATCCAGTTAGATATGTATAGAAAGTTCTTTCACCTGGGGATCATACCTTCTTTCTCTTTTCGAGTCACTTCTGGCTACCATTGGATTCTTGGTAGATAGGGTTTCCTAGGTCCCTAGGCTGGGATAGGTTGCTTTCAGTGCTCCTTCCTATACAACCACTTAATTGCCTTCGCATACAAGTAGATGGCTATGCGGACTCCTTGGTAAGACTACGGCCACTAATCATCTTCGTTTTCATCATCCTATTAGTACCGTATCGTATAAGGGGAAGGGGTAGGCTCAGTAGTTCAGGATAATGAGTCGGCAAGTCTTTGAACAACTGCCATCTCAGCAGCGACACACGAATTAGGGAAAGAAAGAGCAGCTTTGTAAAGCGATTCATATCGATTACTTAACGCCCTCCTCTTCCCTGCTAGTATCCCTTACCATTAAGGTTAGATGTGTGAATGGAACTGAAAGAAAGACTGCTGGAGAATATGGGTCTACTTTATATGCTGGCTTGGTTGATAATATACGAGGACTCTCTATTGTCGCGATTGATGATGATCAAGAAACGGGAGATATGAATGGTTGGGTCATGGTCAGCAATGAGGATCTTCAAAACGAAATAGGAAATATACATATAGTAGCTCGGTAATGTGTTCTTTAGCAGCATTCTCCCACTATCCATTTCTCTTCTTCCTTTCCGTGCCTTTGAGGATTGATTTTCGATATGGTATGCTGTAGGTCTGTGTCAAAGGTGGAACTGAACAAGGAGTTGATGAAGAACGAGAAGGCCTCTCTCCAGGGCAGCCTCATCCTTCTTTTGTCTTGTCCTCCTCTTCGTCGGAATCAAGTTCTTCCTCAGATGAGTACTCCTCCTCACACTAG ATGTACCTTTCAGTCGGTATAGTGTCTTTTGCTTCCCTTACTCCACTCTTTTCTCCTTCCTTCGTTCCTAGCCATCCAATAGGGTTTCCTAGGTCCCTAGGCTGGGATAGGTTGCTTTCAGTGCTCCTTCCTATACAACCACTTAATTGCCTTCGCATACAAGTAGATGGCTATGCGGACTCCTTGGGAAAGAAAGAGCAGCTTTGTAAAGCGATTCATATCGATTACTTAACGCCCTCCTCTTCCCTGCTAGTATCCCTTACCATTAAGGTTAGATGTGTGAATGGAACTGAAAGAAAGACTGCTGGAGAATATGGGTCTACTTTATATGCTGGCTTGGTTGATAATATACGAGGACTCTCTATTGTCGCGATTGATGATGATCAAGAAACGGGAGATATGAATGGTTGGGTCATGGTCTGTGTCAAAGGTGGAACTGAACAAGGAGTTGATGAAGAACGAGAAGGCCTCTCTCCAGGGCAGCCTCATCCTTCTTTTGTCTTGTCCTCCTCTTCGTCGGAATCAAGTTCTTCCTCAGATGAGTACTCCTCCTCACACTAG ATGTACCTTTCAGTCGGTATAGTGTCTTTTGCTTCCCTTACTCCACTCTTTTCTCCTTCCTTCGTTCCTAGCCATCCAATAGGGTTTCCTAGGTCCCTAGGCTGGGATAGGTTGCTTTCAGTGCTCCTTCCTATACAACCACTTAATTGCCTTCGCATACAAGTAGATGGCTATGCGGACTCCTTGGGAAAGAAAGAGCAGCTTTGTAAAGCGATTCATATCGATTACTTAACGCCCTCCTCTTCCCTGCTAGTATCCCTTACCATTAAGGTTAGATGTGTGAATGGAACTGAAAGAAAGACTGCTGGAGAATATGGGTCTACTTTATATGCTGGCTTGGTTGATAATATACGAGGACTCTCTATTGTCGCGATTGATGATGATCAAGAAACGGGAGATATGAATGGTTGGGTCATGGTCTGTGTCAAAGGTGGAACTGAACAAGGAGTTGATGAAGAACGAGAAGGCCTCTCTCCAGGGCAGCCTCATCCTTCTTTTGTCTTGTCCTCCTCTTCGTCGGAATCAAGTTCTTCCTCAGATGAGTACTCCTCCTCACACTAG MYLSVGIVSFASLTPLFSPSFVPSHPIGFPRSLGWDRLLSVLLPIQPLNCLRIQVDGYADSLGKKEQLCKAIHIDYLTPSSSLLVSLTIKVRCVNGTERKTAGEYGSTLYAGLVDNIRGLSIVAIDDDQETGDMNGWVMVCVKGGTEQGVDEEREGLSPGQPHPSFVLSSSSSESSSSSDEYSSSH Homology
BLAST of Csor.00g078420 vs. NCBI nr
Match: KAG6588552.1 (hypothetical protein SDJN03_17117, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 365 bits (937), Expect = 3.34e-127 Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0
BLAST of Csor.00g078420 vs. NCBI nr
Match: KAG6601738.1 (hypothetical protein SDJN03_06971, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 134 bits (338), Expect = 4.45e-37 Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0
BLAST of Csor.00g078420 vs. NCBI nr
Match: KAG6585909.1 (hypothetical protein SDJN03_18642, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 134 bits (338), Expect = 3.58e-36 Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0
BLAST of Csor.00g078420 vs. NCBI nr
Match: GER51459.1 (RNA-directed DNA polymerase [Striga asiatica]) HSP 1 Score: 57.8 bits (138), Expect = 2.81e-06 Identity = 31/42 (73.81%), Postives = 32/42 (76.19%), Query Frame = 0
BLAST of Csor.00g078420 vs. ExPASy TrEMBL
Match: A0A5A7R228 (RNA-directed DNA polymerase OS=Striga asiatica OX=4170 GN=STAS_28848 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.36e-06 Identity = 31/42 (73.81%), Postives = 32/42 (76.19%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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