Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCCAAATTCGTGATTCTCTTCGCTCCGTCAAACAGGAAGCTCTCCTCTTGCTCCTCACTCGCAAAGCGGAACCTGGGAATCGAATTCAAGGTATTTATTTTCCCTTAATTTTCTCCCATTTTCGTTTCATTTATGTTATCGGTTCCACAATTTTTCTATTCTAAGATGAATTTTGTTCAGATTTAAACCTTTTTGTATCTTTGTTTGGCGGGATTTTTGTTTGTTTTCTATAGTAAATTTCAGCTGAATTTTAGTGGGAAGGTGGATATTGTTTCTTGAAATCGAATCTATGTGATTGCTGCTTATTGTTATCATTGTTCATTGACAAATTTAGAACTCCAATCCTCTGTTTTTGCATTCAAAACCCCTTTCAGATTTCAGGCATTGCTCGATTTATACTGACTTTATGCCTCATTTAATGATAATTAGCCTTGTGGGTAGTCTTGGGGCATTTTTTTTTCTTAACAACATTGCCAAATGTTAGATTTTGTGTTCTATGTATTAGTGTGACTCATCAGTTTAAGCAAAATACTCTTGAATGATCTCAGGTTCTCAACATTTTATCCGAGGAAGTGAAACTTTGAATGGCACAATCTACAAGTTTAGTCCATACTGGCCTCTTAAATTATGGTTTTAGTCTCAAAATGAATTCTTCATATTGGAGATATGATATGGTTAAATCACGACCTTCCCCTCCTCGTAGCTTTCGTGTCAAAGCTGTACAAGATACCGGGGGTCCTCGTAGGTTAGTTGATATCATTAGACTTGTGCCTGAGCTCTCGAGAAATTACTTTCGGAGTCCTTCGAGGAGGGCCCTTTTTGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATCTCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTTATTGCTGCTGTGGTATGCGTTCTCCTTACCGAGTATGTTACTCGATTTTATTACAGTCGACCAAAGGTAACTTTCCCCATTGCTCTACTGAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGACGCTTTCAAACTTGCTAGTTAACAGCACTTGATGAAACCATTCTGGTGGTAGCTATGGCATTTACATTTGTAAAGTTCTTTTTGCAATAGTTTTGGTCTTACTCTATATCTTTACAGCTTCTTCAAATTCTTTTTTATGAAATTTTTTCCATTTTCCCCTCTTTGTTTCTTCTGTATATTTTCAACATACGGTTTACATTGAAGAATTAAATGTTCTATTCACCCTCTAATCGAATATAGTAAGAGATTTGAATGTAATTGAATGAGGTCACTGTAATGTGGCTACCCTTGATAACAAAACTCCTAGTTAATGTAACTGCATCCTTCCAATATCTAATGATATTTCTAACTTCCACTCAACAGACCAATTCAAGCATAGTTAACAATTTTTAGATGAGCATAGTTTAACTGGTTTAGGTATAAACACTTTAACCGATTAAGAGATTAGTAATTTGAATCACTATTCCTAACAGCCTCCGTGCCTTTCAAATATTGTACAACAGCAGATACAAATTTGGGTGCTGGCCCTGAGTACAAGGTAAATTCTGAACTTCGGCAGATTCTTTAATGTTCATTCTGCTGTAATTGATTTCATAGACAGTCGACATCATTTGACTAAGATGAAATATTTAGCAGCATTAATCTTGATTGCTAATGCTCTAAAATACTGCTGATCAAATTATTTTTGGATGAGATAGTGTTTTGGAAAAGTTAAAGAAAATAGCATTTGCTGCAGTTTCTTTTCCTCTTAATGATCATCATGTAATTTCTTAGAGATAAAACCACCTCAGAGATTAGGAAAAGAAAAAGGTATAATTAATCTAAATCATGAATTAGACTCAAGTTAAATCTAACTAGGACAATATAACTCAATAGAATGCATAGTTTTGTATTTTAATCACAAACGCTCGAGATAACATTTGAGTTGGATCAATTAATGCTATATATGTCAAACGAGAAAATAACTTTGGGTTGGTTTCATATGCGAATATCAATATGAACTCCATTTCATATCTTCAGACTCTGACAAATCAAATGGATCAATCAAATATCTATTTTGGCAAAAAAAAAAAAAAAAAAAAGGCATTTTAAGTGTAATCCAAAATGGGTGATAATTATAAAAATGTAAAATGAGATTTTCGTTTCTGAGATTTGAGCTTATATTTTATTTGGTTTTAGTTCTACATAGTCGTAGTTGGCCTAATAATAATTTTGAATTCTTCTTTGGTTGATGGATTGTTATTTGTCCATAAATGCATTATAATTCAAAATCTTTATCTCATATCATGGAAGAATATATTGTGTGGATTGGATTCTCTCAACTTGTAAAAAGAGAGGAAATAACCAAAGAATTTTCCAATGCAACAGATGAACATATTGTTTGGATTGGATTCTCTCAACTTGCAAAAAGAGAGGAAATAACCGCACAGAATTTTCCTATGTAACACTGTTATTACGTCAAGTATTCGGTCTCTTAAGAGACCGTTCGAGGGAAGGATTAAGTTAGGTTATAGAGGGAGGGAAAGACTAGGTTAAGTTATGGAGGGTTAGTGTTATGATAAAATTAGTGTTATAATAAATCTAATATTATTATGATAATATGTGTTTAGAGAAAGGATTATGTAGGTAATATTATGATAATGTTATGATAATATATGTTTGGGGAAAGAGTTAGGTACTTATGAGGGGAAGGGTTATGTAGGTAGTGTTTTGGAATTTATTTTTTTATACATTTTTTAAAAATTTGTATTCTAAATTCAATGTACAAGTTTTCTATATTTAATTTACCAAATTGTCTTATTTTGGTAAAACAATTTT
mRNA sequence
TTTCCAAATTCGTGATTCTCTTCGCTCCGTCAAACAGGAAGCTCTCCTCTTGCTCCTCACTCGCAAAGCGGAACCTGGGAATCGAATTCAAGGTTCTCAACATTTTATCCGAGGAAGTGAAACTTTGAATGGCACAATCTACAAGTTTAGTCCATACTGGCCTCTTAAATTATGGTTTTAGTCTCAAAATGAATTCTTCATATTGGAGATATGATATGGTTAAATCACGACCTTCCCCTCCTCGTAGCTTTCGTGTCAAAGCTGTACAAGATACCGGGGGTCCTCGTAGGTTAACTATCTCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTTATTGCTGCTGTGGTATGCGTTCTCCTTACCGAGTATGTTACTCGATTTTATTACAGTCGACCAAAGCCTCCGTGCCTTTCAAATATTGTACAACAGCAGATACAAATTTGGGTGCTGGCCCTGAGTACAAGATGAACATATTGTTTGGATTGGATTCTCTCAACTTGCAAAAAGAGAGGAAATAACCGCACAGAATTTTCCTATGTAACACTGTTATTACGTCAAGTATTCGGTCTCTTAAGAGACCGTTCGAGGGAAGGATTAAGTTAGGTTATAGAGGGAGGGAAAGACTAGGTTAAGTTATGGAGGGTTAGTGTTATGATAAAATTAGTGTTATAATAAATCTAATATTATTATGATAATATGTGTTTAGAGAAAGGATTATGTAGGTAATATTATGATAATGTTATGATAATATATGTTTGGGGAAAGAGTTAGGTACTTATGAGGGGAAGGGTTATGTAGGTAGTGTTTTGGAATTTATTTTTTTATACATTTTTTAAAAATTTGTATTCTAAATTCAATGTACAAGTTTTCTATATTTAATTTACCAAATTGTCTTATTTTGGTAAAACAATTTT
Coding sequence (CDS)
ATGGCACAATCTACAAGTTTAGTCCATACTGGCCTCTTAAATTATGGTTTTAGTCTCAAAATGAATTCTTCATATTGGAGATATGATATGGTTAAATCACGACCTTCCCCTCCTCGTAGCTTTCGTGTCAAAGCTGTACAAGATACCGGGGGTCCTCGTAGGTTAACTATCTCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTTATTGCTGCTGTGGTATGCGTTCTCCTTACCGAGTATGTTACTCGATTTTATTACAGTCGACCAAAGCCTCCGTGCCTTTCAAATATTGTACAACAGCAGATACAAATTTGGGTGCTGGCCCTGAGTACAAGATGA
Protein sequence
MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKPPCLSNIVQQQIQIWVLALSTR
Homology
BLAST of Cmc09g0254111 vs. NCBI nr
Match:
XP_008467247.1 (PREDICTED: uncharacterized protein LOC103504644 isoform X2 [Cucumis melo])
HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 113/150 (75.33%), Postives = 113/150 (75.33%), Query Frame = 0
Query: 1 MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRL----- 60
MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRL
Sbjct: 1 MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60
Query: 61 --------------------------------TISLSFGALGVNDVIAAVVCVLLTEYVT 114
TISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61 LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
BLAST of Cmc09g0254111 vs. NCBI nr
Match:
XP_008467248.1 (PREDICTED: uncharacterized protein LOC103504644 isoform X3 [Cucumis melo])
HSP 1 Score: 180.6 bits (457), Expect = 7.3e-42
Identity = 103/150 (68.67%), Postives = 103/150 (68.67%), Query Frame = 0
Query: 1 MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRL----- 60
MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRL
Sbjct: 1 MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60
Query: 61 --------------------------------TISLSFGALGVNDVIAAVVCVLLTEYVT 114
TISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61 LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
BLAST of Cmc09g0254111 vs. NCBI nr
Match:
XP_008467245.1 (PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo])
HSP 1 Score: 165.6 bits (418), Expect = 2.4e-37
Identity = 91/128 (71.09%), Postives = 91/128 (71.09%), Query Frame = 0
Query: 1 MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRL----- 60
MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRL
Sbjct: 1 MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60
Query: 61 --------------------------------TISLSFGALGVNDVIAAVVCVLLTEYVT 92
TISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61 LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
BLAST of Cmc09g0254111 vs. NCBI nr
Match:
XP_004143642.1 (uncharacterized protein ycf20 [Cucumis sativus] >KGN50402.1 hypothetical protein Csa_000018 [Cucumis sativus])
HSP 1 Score: 155.6 bits (392), Expect = 2.5e-34
Identity = 86/128 (67.19%), Postives = 87/128 (67.97%), Query Frame = 0
Query: 1 MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRL----- 60
MAQS SLVHT LLNYGF+ KMN SYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRL
Sbjct: 1 MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60
Query: 61 --------------------------------TISLSFGALGVNDVIAAVVCVLLTEYVT 92
TISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61 LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
BLAST of Cmc09g0254111 vs. NCBI nr
Match:
KAG6579671.1 (hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 135.6 bits (340), Expect = 2.7e-28
Identity = 78/128 (60.94%), Postives = 83/128 (64.84%), Query Frame = 0
Query: 1 MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRL----- 60
MAQS SLV TGLLNY F+ + N+SYWRYDM+KSRPS PRS +KAVQDTGGPRRL
Sbjct: 1 MAQSASLVSTGLLNYAFTPQKNASYWRYDMIKSRPS-PRSLCIKAVQDTGGPRRLVDIIR 60
Query: 61 --------------------------------TISLSFGALGVNDVIAAVVCVLLTEYVT 92
TISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61 LVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
BLAST of Cmc09g0254111 vs. ExPASy TrEMBL
Match:
A0A1S3CTA6 (uncharacterized protein LOC103504644 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103504644 PE=3 SV=1)
HSP 1 Score: 209.9 bits (533), Expect = 5.5e-51
Identity = 113/150 (75.33%), Postives = 113/150 (75.33%), Query Frame = 0
Query: 1 MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRL----- 60
MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRL
Sbjct: 1 MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60
Query: 61 --------------------------------TISLSFGALGVNDVIAAVVCVLLTEYVT 114
TISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61 LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
BLAST of Cmc09g0254111 vs. ExPASy TrEMBL
Match:
A0A1S3CUD8 (uncharacterized protein LOC103504644 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103504644 PE=3 SV=1)
HSP 1 Score: 180.6 bits (457), Expect = 3.6e-42
Identity = 103/150 (68.67%), Postives = 103/150 (68.67%), Query Frame = 0
Query: 1 MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRL----- 60
MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRL
Sbjct: 1 MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60
Query: 61 --------------------------------TISLSFGALGVNDVIAAVVCVLLTEYVT 114
TISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61 LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
BLAST of Cmc09g0254111 vs. ExPASy TrEMBL
Match:
A0A1S3CT33 (uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644 PE=3 SV=1)
HSP 1 Score: 165.6 bits (418), Expect = 1.2e-37
Identity = 91/128 (71.09%), Postives = 91/128 (71.09%), Query Frame = 0
Query: 1 MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRL----- 60
MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRL
Sbjct: 1 MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60
Query: 61 --------------------------------TISLSFGALGVNDVIAAVVCVLLTEYVT 92
TISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61 LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
BLAST of Cmc09g0254111 vs. ExPASy TrEMBL
Match:
A0A0A0KPS1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=3 SV=1)
HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 86/128 (67.19%), Postives = 87/128 (67.97%), Query Frame = 0
Query: 1 MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRL----- 60
MAQS SLVHT LLNYGF+ KMN SYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRL
Sbjct: 1 MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60
Query: 61 --------------------------------TISLSFGALGVNDVIAAVVCVLLTEYVT 92
TISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61 LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
BLAST of Cmc09g0254111 vs. ExPASy TrEMBL
Match:
A0A6J1I440 (uncharacterized protein ycf20 OS=Cucurbita maxima OX=3661 GN=LOC111468994 PE=3 SV=1)
HSP 1 Score: 134.4 bits (337), Expect = 2.9e-28
Identity = 77/128 (60.16%), Postives = 83/128 (64.84%), Query Frame = 0
Query: 1 MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRL----- 60
MAQS SLV TGLLNY F+ + N+SYWRYD++KSRPS PRS +KAVQDTGGPRRL
Sbjct: 1 MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPS-PRSLGIKAVQDTGGPRRLVDIIR 60
Query: 61 --------------------------------TISLSFGALGVNDVIAAVVCVLLTEYVT 92
TISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61 LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
BLAST of Cmc09g0254111 vs. TAIR 10
Match:
AT5G43050.1 (Protein of unknown function (DUF565) )
HSP 1 Score: 69.7 bits (169), Expect = 1.7e-12
Identity = 42/70 (60.00%), Postives = 49/70 (70.00%), Query Frame = 0
Query: 29 DMVKSRPSPPRSFRVKAVQDT--GGPRRL-------TISLSFGALGVNDVIAAVVCVLLT 88
D+++S P R++ K + T GG L TISLSFGALGVNDVIAAV+CVLLT
Sbjct: 59 DIIRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLT 118
Query: 89 EYVTRFYYSR 90
EYVTRFYYSR
Sbjct: 119 EYVTRFYYSR 128
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_008467247.1 | 1.1e-50 | 75.33 | PREDICTED: uncharacterized protein LOC103504644 isoform X2 [Cucumis melo] | [more] |
XP_008467248.1 | 7.3e-42 | 68.67 | PREDICTED: uncharacterized protein LOC103504644 isoform X3 [Cucumis melo] | [more] |
XP_008467245.1 | 2.4e-37 | 71.09 | PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo] | [more] |
XP_004143642.1 | 2.5e-34 | 67.19 | uncharacterized protein ycf20 [Cucumis sativus] >KGN50402.1 hypothetical protein... | [more] |
KAG6579671.1 | 2.7e-28 | 60.94 | hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3CTA6 | 5.5e-51 | 75.33 | uncharacterized protein LOC103504644 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
A0A1S3CUD8 | 3.6e-42 | 68.67 | uncharacterized protein LOC103504644 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
A0A1S3CT33 | 1.2e-37 | 71.09 | uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644... | [more] |
A0A0A0KPS1 | 1.2e-34 | 67.19 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=3 SV=1 | [more] |
A0A6J1I440 | 2.9e-28 | 60.16 | uncharacterized protein ycf20 OS=Cucurbita maxima OX=3661 GN=LOC111468994 PE=3 S... | [more] |
Match Name | E-value | Identity | Description | |
AT5G43050.1 | 1.7e-12 | 60.00 | Protein of unknown function (DUF565) | [more] |