Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATTCCGAAGGGTTGAACGGAAAGGTCGTCATCAGTCTCACCATCAGCATCACCGTCTGAGAGACAGTCACTCACACACGCAGTCTCTTTATCTCTCTCCATCTCCATCTCCGGCTCTCTTCCACTCTCTCTGTTTTCCGTACTCTTGAGCCACCAAAATCACACCAACCAATTCTAAGACGCATCACAAATTCAGATGGTGAGGAAATGTAGAGCAGTTGCAGAGATTGCAGTCATGGAGGTGGACGTCAGGAGGACTACCAGACCTCCACCTGATTTGGAGGATGTGCCGCATTCCTCCACCTCCACTTCCGCTAACAAGAGGCAGATCACCGCTGGAACTGACTTTCACTTCTCCACCGCCACGACGTCGTTTGTCAGGCTCCCGAGACGGAGACGCCGCCTTGTTTTGCCGGTGGAGAGTTCTCTCCGGCGGCCGAGCACGACGTCGACGGAGGAGAGGAGCTCTACTAGTCCTATCTCCGATGACGATGCGTCCGCTTTTTGCTGCTCAAGTAATGGCTGCAGTGAGGTTGTTGAGGAGAGTAGCAAGTTTGTAGATCTGGAGGTGACACTTTTGAACGCTAAATAGATTTGGAGTTGTTTGTTTTGTTTGTTTTTGTGAATTCTGAAGTTTTCTATTTTTTTTTTTATTTCATTTTGTGTTTTTGAAAATTTTGTTGTTCATAATACTTTTTGCAGGATGAGGAAAAAGATGAACATGGAATCGCGTACAAATCTAGCAGAGAAAGGTTTTTAATATCGCACGAACTTCTTAATTTCCTACTGATAATCTCGAACTGTTTTTTTTTTTTTTTTTTTTTGAATTCAAAATTCGAAGAAAGAGTGTTTAGAAACGGACTTGACCTCCATTAAACTAATTAATGAATTGTTTCCGTTTGTGAATTTATTTCCTCTCTCCTCCTCTCCCTCTCCCTCTCTCTTTCGTTCATAAATACACAGTTCGCGATTACAGTCGCATAAATCTTCTTCACACTCCATTCTTCTTTTTCGTCTTCTTACAGGAGAGAAACGACTCCGTCTAGCCATTTCCAATCAACGATGTCCGGCGATATGGAGTCTCTGGCAGTGAAAACCAACGCAACTTCCGGCAATGTATCTTCGTCGTCTTCAATGAAGAAGCCAGCGGAATCGGAGCTCGAAGAATTCTTCACCGCCGCCGAGAAAAAAATCCAGAAACGTTTCGCAGAGAAGTAAGTTAAACGGAGCCGCCCTAGGTTCTTCAATTTTTGTTCTAGCTATGAAGAAATTAACAGAGTTTGAAAAGGAATTATGATCACAATTGCAGGTATAATTACGACATTGTAGAGGACGTTCCGTTGGAAGGACGTTACGAATGGATTCGATTAAAGCCATAAAAGAGAAAACAAACTGAAGAACACCTTTCTGTGAACACACTCATATTTTAGCTTAATCCTCCATAATTAGTACGTACTAATCATCATTCAATTCTACCTTTCTTTGTAGACTTCCTTCTCCTCCTTTTCTCTGCTTGCTTCAAATTTTGTACAGTTAGCGTTTGCACAATCATCGTGTAAAAGTAGAAACCCAAGTTAATTTGTTGTTCGTACGATTGTTCAGAGGGAAGAAAAAAAGAAATTGTAAATTCGTTAGAGAATCAGGAAGAATGGCACAAAAAAAGATTCTTAGTACGATTCCCAGTCTGAAAATTCCTCCTGATTTCATTTATTTCTAATTTAAATTTGAC
mRNA sequence
CAATTCCGAAGGGTTGAACGGAAAGGTCGTCATCAGTCTCACCATCAGCATCACCGTCTGAGAGACAGTCACTCACACACGCAGTCTCTTTATCTCTCTCCATCTCCATCTCCGGCTCTCTTCCACTCTCTCTGTTTTCCGTACTCTTGAGCCACCAAAATCACACCAACCAATTCTAAGACGCATCACAAATTCAGATGGTGAGGAAATGTAGAGCAGTTGCAGAGATTGCAGTCATGGAGGTGGACGTCAGGAGGACTACCAGACCTCCACCTGATTTGGAGGATGTGCCGCATTCCTCCACCTCCACTTCCGCTAACAAGAGGCAGATCACCGCTGGAACTGACTTTCACTTCTCCACCGCCACGACGTCGTTTGTCAGGCTCCCGAGACGGAGACGCCGCCTTGTTTTGCCGGTGGAGAGTTCTCTCCGGCGGCCGAGCACGACGTCGACGGAGGAGAGGAGCTCTACTAGTCCTATCTCCGATGACGATGCGTCCGCTTTTTGCTGCTCAAGTAATGGCTGCAGTGAGGTTGTTGAGGAGAGTAGCAAGTTTGTAGATCTGGAGGATGAGGAAAAAGATGAACATGGAATCGCGTACAAATCTAGCAGAGAAAGGAGAGAAACGACTCCGTCTAGCCATTTCCAATCAACGATGTCCGGCGATATGGAGTCTCTGGCAGTGAAAACCAACGCAACTTCCGGCAATGTATCTTCGTCGTCTTCAATGAAGAAGCCAGCGGAATCGGAGCTCGAAGAATTCTTCACCGCCGCCGAGAAAAAAATCCAGAAACGTTTCGCAGAGAAGTATAATTACGACATTGTAGAGGACGTTCCGTTGGAAGGACGTTACGAATGGATTCGATTAAAGCCATAAAAGAGAAAACAAACTGAAGAACACCTTTCTGTGAACACACTCATATTTTAGCTTAATCCTCCATAATTAGTACGTACTAATCATCATTCAATTCTACCTTTCTTTGTAGACTTCCTTCTCCTCCTTTTCTCTGCTTGCTTCAAATTTTGTACAGTTAGCGTTTGCACAATCATCGTGTAAAAGTAGAAACCCAAGTTAATTTGTTGTTCGTACGATTGTTCAGAGGGAAGAAAAAAAGAAATTGTAAATTCGTTAGAGAATCAGGAAGAATGGCACAAAAAAAGATTCTTAGTACGATTCCCAGTCTGAAAATTCCTCCTGATTTCATTTATTTCTAATTTAAATTTGAC
Coding sequence (CDS)
ATGGTGAGGAAATGTAGAGCAGTTGCAGAGATTGCAGTCATGGAGGTGGACGTCAGGAGGACTACCAGACCTCCACCTGATTTGGAGGATGTGCCGCATTCCTCCACCTCCACTTCCGCTAACAAGAGGCAGATCACCGCTGGAACTGACTTTCACTTCTCCACCGCCACGACGTCGTTTGTCAGGCTCCCGAGACGGAGACGCCGCCTTGTTTTGCCGGTGGAGAGTTCTCTCCGGCGGCCGAGCACGACGTCGACGGAGGAGAGGAGCTCTACTAGTCCTATCTCCGATGACGATGCGTCCGCTTTTTGCTGCTCAAGTAATGGCTGCAGTGAGGTTGTTGAGGAGAGTAGCAAGTTTGTAGATCTGGAGGATGAGGAAAAAGATGAACATGGAATCGCGTACAAATCTAGCAGAGAAAGGAGAGAAACGACTCCGTCTAGCCATTTCCAATCAACGATGTCCGGCGATATGGAGTCTCTGGCAGTGAAAACCAACGCAACTTCCGGCAATGTATCTTCGTCGTCTTCAATGAAGAAGCCAGCGGAATCGGAGCTCGAAGAATTCTTCACCGCCGCCGAGAAAAAAATCCAGAAACGTTTCGCAGAGAAGTATAATTACGACATTGTAGAGGACGTTCCGTTGGAAGGACGTTACGAATGGATTCGATTAAAGCCATAA
Protein sequence
MVRKCRAVAEIAVMEVDVRRTTRPPPDLEDVPHSSTSTSANKRQITAGTDFHFSTATTSFVRLPRRRRRLVLPVESSLRRPSTTSTEERSSTSPISDDDASAFCCSSNGCSEVVEESSKFVDLEDEEKDEHGIAYKSSRERRETTPSSHFQSTMSGDMESLAVKTNATSGNVSSSSSMKKPAESELEEFFTAAEKKIQKRFAEKYNYDIVEDVPLEGRYEWIRLKP
Homology
BLAST of CmaCh02G005580 vs. ExPASy Swiss-Prot
Match:
Q94CL9 (Cyclin-dependent kinase inhibitor 7 OS=Arabidopsis thaliana OX=3702 GN=KRP7 PE=1 SV=2)
HSP 1 Score: 75.1 bits (183), Expect = 1.1e-12
Identity = 58/168 (34.52%), Postives = 80/168 (47.62%), Query Frame = 0
Query: 78 LRRPSTTSTEERSSTSPISDDDASAFC-------------------CSSNGCSEVVEESS 137
LR P+ T + SS+ S D+ FC CSS+ +E+
Sbjct: 29 LRSPTRTLSSSSSSSLAYSVSDSGGFCSVALSEEEDDHLSSSISSGCSSSETNEIATR-L 88
Query: 138 KFVDLEDEEKDEHGIAYKSSRERRETTPSSHFQSTMSGDMESLAVKTNATSGNVSSSSSM 197
F DLE E E I+ + R+ SS + +M+S +
Sbjct: 89 PFSDLEAHEISETEISTLLTNNFRKQGISSSENLGETAEMDSATTEMRDQRKTEKKKKME 148
Query: 198 KKPAESELEEFFTAAEKKIQKRFAEKYNYDIVEDVPLEGRYEWIRLKP 227
K P ++EL++FF+AAE+ QKRF EKYNYDIV D PLEGRY+W+ LKP
Sbjct: 149 KSPTQAELDDFFSAAERYEQKRFTEKYNYDIVNDTPLEGRYQWVSLKP 195
BLAST of CmaCh02G005580 vs. ExPASy Swiss-Prot
Match:
Q67J15 (Cyclin-dependent kinase inhibitor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=KRP6 PE=3 SV=1)
HSP 1 Score: 67.8 bits (164), Expect = 1.8e-10
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 0
Query: 179 KKPAESELEEFFTAAEKKIQKRFAEKYNYDIVEDVPLEGRYEWIRLKP 227
+ P E E+E F AAE + +RFA KYNYDIV+D P++GRYEW+R++P
Sbjct: 39 RSPPEEEVEAFLAAAESSVARRFAAKYNYDIVKDAPMDGRYEWVRVRP 86
BLAST of CmaCh02G005580 vs. ExPASy Swiss-Prot
Match:
Q9FKB5 (Cyclin-dependent kinase inhibitor 3 OS=Arabidopsis thaliana OX=3702 GN=KRP3 PE=1 SV=1)
HSP 1 Score: 66.2 bits (160), Expect = 5.3e-10
Identity = 72/237 (30.38%), Postives = 115/237 (48.52%), Query Frame = 0
Query: 2 VRKCRAVAEIAVMEVDVRRTTRPPPDLEDVPHSSTSTSANKRQITAGTDFHFSTATTSFV 61
++K + +I+VMEV + T P P V + T A KR ++ D ++ ++
Sbjct: 5 MKKSKITGDISVMEVS--KATAPSP---GVRTRAAKTLALKRLNSSAADSALPNDSSCYL 64
Query: 62 RLPRRRRRLVLPVESSLRRPS------TTSTEERSSTSPISDDDASAFCCSSNGCSEVVE 121
+L R RRL P SSL P + +E S S + ++ SSN E
Sbjct: 65 QL--RSRRLEKP--SSLIEPKQPPRVHRSGIKESGSRSRVDSVNSVPVAQSSN----EDE 124
Query: 122 ESSKFVDLEDEEKDEHGIAYKSSRERRETTPSSHFQSTMSGDMESLAVKTNATSGNVSSS 181
FV ++ E+ + ++S RE+TP + + DME + ++T ++
Sbjct: 125 CFDNFVSVQ-VSCGENSLGFESRHSTRESTPCNFVE-----DMEIMVTPGSSTRSMCRAT 184
Query: 182 SSMKK------PAESELEEFFTAAEKKIQKRFAEKYNYDIVEDVPLEGRYEWIRLKP 227
+ P SE+EEFF AE++ Q+ F EKYN+DIV D+PL GRYEW+++KP
Sbjct: 185 KEYTREQDNVIPTTSEMEEFFAYAEQQQQRLFMEKYNFDIVNDIPLSGRYEWVQVKP 222
BLAST of CmaCh02G005580 vs. ExPASy Swiss-Prot
Match:
Q67Y93 (Cyclin-dependent kinase inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=KRP1 PE=1 SV=2)
HSP 1 Score: 59.3 bits (142), Expect = 6.5e-08
Identity = 50/171 (29.24%), Postives = 80/171 (46.78%), Query Frame = 0
Query: 79 RRPSTTSTEERSSTSPISDDDASAFCCSSNGCSEVVEESSKFVDLEDEEKD--------E 138
RR +E+ SS S + D+ S+ C SN + + + LE+E+KD
Sbjct: 26 RRIVYVRSEKSSSVSVVGDNGVSSSCSGSN-----EYKKKELIHLEEEDKDGDTETSTYR 85
Query: 139 HGIAYKSSRERRETTP----------SSHFQSTMSGDMESLAVKTNATSGNVSSSSSMK- 198
G K RE SS F+S + ++ V++ K
Sbjct: 86 RGTKRKLFENLREEEKEELSKSMENYSSEFESAVKESLDCCCSGRKTMEETVTAEEEEKA 145
Query: 199 -----KPAESELEEFFTAAEKKIQKRFAEKYNYDIVEDVPLEGRYEWIRLK 226
P ESE+E+FF AEK+++++F +KYN+D ++ PLEGRYEW++L+
Sbjct: 146 KLMTEMPTESEIEDFFVEAEKQLKEKFKKKYNFDFEKEKPLEGRYEWVKLE 191
BLAST of CmaCh02G005580 vs. ExPASy Swiss-Prot
Match:
Q0WNX9 (Cyclin-dependent kinase inhibitor 6 OS=Arabidopsis thaliana OX=3702 GN=KRP6 PE=1 SV=2)
HSP 1 Score: 57.8 bits (138), Expect = 1.9e-07
Identity = 53/157 (33.76%), Postives = 81/157 (51.59%), Query Frame = 0
Query: 76 SSLRRPSTTSTEERSSTSPISDDDASAFC---CSSNGCSEVVEESSKF-VDLEDE--EKD 135
SS+ + +++E S T + D S+ C ++ E+ + SS F VDLED E +
Sbjct: 46 SSVASSAALASDECSVTIGGEESDQSSSISSGCFTSESKEIAKNSSSFGVDLEDHQIETE 105
Query: 136 EHGIAYKSSRERRETTPSSHFQSTMSGDMESLAVKTNATSGNVSSSSSMKKPAESELEEF 195
+ +S R+ET+P S + +MES + G K P +E+E+
Sbjct: 106 TETSTFITSNFRKETSPVSEGLGETTTEMESSSATKRKQPG------VRKTPTAAEIEDL 165
Query: 196 FTAAEKK--IQKRFAEKYNYDIVEDVPLEGRYEWIRL 225
F+ E + +K+F EKYN+DIV D PLEGRY+W RL
Sbjct: 166 FSELESQDDKKKQFIEKYNFDIVNDEPLEGRYKWDRL 196
BLAST of CmaCh02G005580 vs. TAIR 10
Match:
AT1G49620.1 (Cyclin-dependent kinase inhibitor family protein )
HSP 1 Score: 75.1 bits (183), Expect = 8.1e-14
Identity = 58/168 (34.52%), Postives = 80/168 (47.62%), Query Frame = 0
Query: 78 LRRPSTTSTEERSSTSPISDDDASAFC-------------------CSSNGCSEVVEESS 137
LR P+ T + SS+ S D+ FC CSS+ +E+
Sbjct: 29 LRSPTRTLSSSSSSSLAYSVSDSGGFCSVALSEEEDDHLSSSISSGCSSSETNEIATR-L 88
Query: 138 KFVDLEDEEKDEHGIAYKSSRERRETTPSSHFQSTMSGDMESLAVKTNATSGNVSSSSSM 197
F DLE E E I+ + R+ SS + +M+S +
Sbjct: 89 PFSDLEAHEISETEISTLLTNNFRKQGISSSENLGETAEMDSATTEMRDQRKTEKKKKME 148
Query: 198 KKPAESELEEFFTAAEKKIQKRFAEKYNYDIVEDVPLEGRYEWIRLKP 227
K P ++EL++FF+AAE+ QKRF EKYNYDIV D PLEGRY+W+ LKP
Sbjct: 149 KSPTQAELDDFFSAAERYEQKRFTEKYNYDIVNDTPLEGRYQWVSLKP 195
BLAST of CmaCh02G005580 vs. TAIR 10
Match:
AT5G48820.1 (inhibitor/interactor with cyclin-dependent kinase )
HSP 1 Score: 66.2 bits (160), Expect = 3.8e-11
Identity = 72/237 (30.38%), Postives = 115/237 (48.52%), Query Frame = 0
Query: 2 VRKCRAVAEIAVMEVDVRRTTRPPPDLEDVPHSSTSTSANKRQITAGTDFHFSTATTSFV 61
++K + +I+VMEV + T P P V + T A KR ++ D ++ ++
Sbjct: 5 MKKSKITGDISVMEVS--KATAPSP---GVRTRAAKTLALKRLNSSAADSALPNDSSCYL 64
Query: 62 RLPRRRRRLVLPVESSLRRPS------TTSTEERSSTSPISDDDASAFCCSSNGCSEVVE 121
+L R RRL P SSL P + +E S S + ++ SSN E
Sbjct: 65 QL--RSRRLEKP--SSLIEPKQPPRVHRSGIKESGSRSRVDSVNSVPVAQSSN----EDE 124
Query: 122 ESSKFVDLEDEEKDEHGIAYKSSRERRETTPSSHFQSTMSGDMESLAVKTNATSGNVSSS 181
FV ++ E+ + ++S RE+TP + + DME + ++T ++
Sbjct: 125 CFDNFVSVQ-VSCGENSLGFESRHSTRESTPCNFVE-----DMEIMVTPGSSTRSMCRAT 184
Query: 182 SSMKK------PAESELEEFFTAAEKKIQKRFAEKYNYDIVEDVPLEGRYEWIRLKP 227
+ P SE+EEFF AE++ Q+ F EKYN+DIV D+PL GRYEW+++KP
Sbjct: 185 KEYTREQDNVIPTTSEMEEFFAYAEQQQQRLFMEKYNFDIVNDIPLSGRYEWVQVKP 222
BLAST of CmaCh02G005580 vs. TAIR 10
Match:
AT2G23430.1 (Cyclin-dependent kinase inhibitor family protein )
HSP 1 Score: 59.3 bits (142), Expect = 4.6e-09
Identity = 50/171 (29.24%), Postives = 80/171 (46.78%), Query Frame = 0
Query: 79 RRPSTTSTEERSSTSPISDDDASAFCCSSNGCSEVVEESSKFVDLEDEEKD--------E 138
RR +E+ SS S + D+ S+ C SN + + + LE+E+KD
Sbjct: 26 RRIVYVRSEKSSSVSVVGDNGVSSSCSGSN-----EYKKKELIHLEEEDKDGDTETSTYR 85
Query: 139 HGIAYKSSRERRETTP----------SSHFQSTMSGDMESLAVKTNATSGNVSSSSSMK- 198
G K RE SS F+S + ++ V++ K
Sbjct: 86 RGTKRKLFENLREEEKEELSKSMENYSSEFESAVKESLDCCCSGRKTMEETVTAEEEEKA 145
Query: 199 -----KPAESELEEFFTAAEKKIQKRFAEKYNYDIVEDVPLEGRYEWIRLK 226
P ESE+E+FF AEK+++++F +KYN+D ++ PLEGRYEW++L+
Sbjct: 146 KLMTEMPTESEIEDFFVEAEKQLKEKFKKKYNFDFEKEKPLEGRYEWVKLE 191
BLAST of CmaCh02G005580 vs. TAIR 10
Match:
AT3G19150.1 (KIP-related protein 6 )
HSP 1 Score: 57.8 bits (138), Expect = 1.3e-08
Identity = 53/157 (33.76%), Postives = 81/157 (51.59%), Query Frame = 0
Query: 76 SSLRRPSTTSTEERSSTSPISDDDASAFC---CSSNGCSEVVEESSKF-VDLEDE--EKD 135
SS+ + +++E S T + D S+ C ++ E+ + SS F VDLED E +
Sbjct: 46 SSVASSAALASDECSVTIGGEESDQSSSISSGCFTSESKEIAKNSSSFGVDLEDHQIETE 105
Query: 136 EHGIAYKSSRERRETTPSSHFQSTMSGDMESLAVKTNATSGNVSSSSSMKKPAESELEEF 195
+ +S R+ET+P S + +MES + G K P +E+E+
Sbjct: 106 TETSTFITSNFRKETSPVSEGLGETTTEMESSSATKRKQPG------VRKTPTAAEIEDL 165
Query: 196 FTAAEKK--IQKRFAEKYNYDIVEDVPLEGRYEWIRL 225
F+ E + +K+F EKYN+DIV D PLEGRY+W RL
Sbjct: 166 FSELESQDDKKKQFIEKYNFDIVNDEPLEGRYKWDRL 196
BLAST of CmaCh02G005580 vs. TAIR 10
Match:
AT5G48820.2 (inhibitor/interactor with cyclin-dependent kinase )
HSP 1 Score: 55.1 bits (131), Expect = 8.7e-08
Identity = 72/255 (28.24%), Postives = 115/255 (45.10%), Query Frame = 0
Query: 2 VRKCRAVAEIAVMEVDVRRTTRPPPDLEDVPHSSTSTSANKRQITAGTDFHFSTATTSFV 61
++K + +I+VMEV + T P P V + T A KR ++ D ++ ++
Sbjct: 5 MKKSKITGDISVMEVS--KATAPSP---GVRTRAAKTLALKRLNSSAADSALPNDSSCYL 64
Query: 62 RLPRRRRRLVLPVESSLRRPS------TTSTEERSSTSPISDDDASAFCCSSNGCSEVVE 121
+L R RRL P SSL P + +E S S + ++ SSN E
Sbjct: 65 QL--RSRRLEKP--SSLIEPKQPPRVHRSGIKESGSRSRVDSVNSVPVAQSSN----EDE 124
Query: 122 ESSKFVDLEDEEKDEHGIAYKSSRE------------------RRETTPSSHFQSTMSGD 181
FV ++ E+ + ++S RE+TP + + D
Sbjct: 125 CFDNFVSVQ-VSCGENSLGFESRHRFVVFFFFFLFFMFPLLVCTRESTPCNFVE-----D 184
Query: 182 MESLAVKTNATSGNVSSSSSMKK------PAESELEEFFTAAEKKIQKRFAEKYNYDIVE 227
ME + ++T ++ + P SE+EEFF AE++ Q+ F EKYN+DIV
Sbjct: 185 MEIMVTPGSSTRSMCRATKEYTREQDNVIPTTSEMEEFFAYAEQQQQRLFMEKYNFDIVN 240
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q94CL9 | 1.1e-12 | 34.52 | Cyclin-dependent kinase inhibitor 7 OS=Arabidopsis thaliana OX=3702 GN=KRP7 PE=1... | [more] |
Q67J15 | 1.8e-10 | 56.25 | Cyclin-dependent kinase inhibitor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=... | [more] |
Q9FKB5 | 5.3e-10 | 30.38 | Cyclin-dependent kinase inhibitor 3 OS=Arabidopsis thaliana OX=3702 GN=KRP3 PE=1... | [more] |
Q67Y93 | 6.5e-08 | 29.24 | Cyclin-dependent kinase inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=KRP1 PE=1... | [more] |
Q0WNX9 | 1.9e-07 | 33.76 | Cyclin-dependent kinase inhibitor 6 OS=Arabidopsis thaliana OX=3702 GN=KRP6 PE=1... | [more] |