Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon five_prime_UTR CDS polypeptide three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAGCTGTTGTTTGTCACTCTCTCTTGCTTGCATCTCATTTCTCTCTTTCAG GTTTTTTTTTTCTCTCTCTATCTCTAGTTTTCTTCCGGGTTTTTTCTCGAAATTTTCCTTTTTTGTTCTTGTTACCGGTTGAAACTGAGATACGAACACTTAACTGATTCAAGAGTGTTCATATGACTCGGTAAATTGATGTAACCTCGATTATTTTTATTATTATTTTTTTTTCATGAATTTTTTAAAAGTTGAAAATTCAGTTCAAATAGTCTATTAACATTTTTTTTTTTATTGGGTTAGCCTAATTAACTCGAAATATTTTTTTAAAAAAATAATTAACTTGGAAATGTTTGATATTCCAATTTTAGTTATTAATTTTATTTTTAAAATAGAATAATCTGAATGTAATTTTTCTTTCTACTTGATTTAATTCATTAATTTAACCATCAACTTTTTTTAAATGACAGTAGATGTTTTATTTATTTTAAAACAAAAATATTTTTTTAAATAAAAGTAACAAAATAAAATGATATATATTTATTTTATTATTATTTGGCCAACACAATTATGAACTATTTATGATGAAGATATTTTCGTACGAGAAATTGCAATATTGTGGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCACTGTCGCTAGTGATATCATAACAGCCATACTTCTGTTTTATAAACACTCACTGTTTCTCTTTTATATTTCTTCCATTGTTAGGCAAAAATCCAAAGCTCTCTTTCTTCCATCATCCATTTCTAACACCCAAAACAAAGCTCCAAAATTGGCACATCA ATGGCGAAGCTGGCGGAACAGGAATCTCAGAGCAAGGAGAACATGAAGAACGCCATGTTAAAGCACGAGCAGACATTTCGTCATCAA GTACGTTTCTTTATCCCATTTTCTCATCTGGGTTTGTGTTTTTTTACACTAAAAATCTTGCTTTCAGGTGTATGAACTCCACAGATTGTACAGAATTCAGAAGCTTTTGATGAAGAACATAACAGAAAACAGAGGAAAAACAGAGAGATGGGAAGTGAAAAATGAAGAAGAAGAAGAAGATGATGATGAAAAGGATAGTGATTTTATTGAAGAAAGTGAGGTTGAATTGACATTGGGTCCTTCAAATTACAGCAATCAAGTTGGTGGAGGAAGGAGAAGAAGAAGAAAGAGCTGCTTCTCTTCTTCTTCTTCGTCTTCAACCACAGGCTCTGCTCAAAAAAATCGAAGCTTTTACAGACATGGTGAGCTTGTTGGTGGCTCTGAAATGGGGTTTGTGGGGTTTCTTGAAGATGAGATGAGGCTTTCACAGCACCATCCAAATCCATGGCTTTGTCAACCTCTAACCCTTAATCTCACTTCATAA ACACTTCGATTCTTTTATGTTCTGCTTATTTTTTAGTTTTCTTGGCTGATTGGGCGTCTAATCTTCTCTTTGTACAAGTTTATAACCAAGTTAGTATAATTATAATCGCGCGCCTTTTAGGTCTTGTTTGATAATCATTTGTTAGAATGATAGCTCCGTTGGGTCGT mRNA sequence
GGAAGCTGTTGTTTGTCACTCTCTCTTGCTTGCATCTCATTTCTCTCTTTCAGGCAAAAATCCAAAGCTCTCTTTCTTCCATCATCCATTTCTAACACCCAAAACAAAGCTCCAAAATTGGCACATCAATGGCGAAGCTGGCGGAACAGGAATCTCAGAGCAAGGAGAACATGAAGAACGCCATGTTAAAGCACGAGCAGACATTTCGTCATCAAGTGTATGAACTCCACAGATTGTACAGAATTCAGAAGCTTTTGATGAAGAACATAACAGAAAACAGAGGAAAAACAGAGAGATGGGAAGTGAAAAATGAAGAAGAAGAAGAAGATGATGATGAAAAGGATAGTGATTTTATTGAAGAAAGTGAGGTTGAATTGACATTGGGTCCTTCAAATTACAGCAATCAAGTTGGTGGAGGAAGGAGAAGAAGAAGAAAGAGCTGCTTCTCTTCTTCTTCTTCGTCTTCAACCACAGGCTCTGCTCAAAAAAATCGAAGCTTTTACAGACATGGTGAGCTTGTTGGTGGCTCTGAAATGGGGTTTGTGGGGTTTCTTGAAGATGAGATGAGGCTTTCACAGCACCATCCAAATCCATGGCTTTGTCAACCTCTAACCCTTAATCTCACTTCATAAACACTTCGATTCTTTTATGTTCTGCTTATTTTTTAGTTTTCTTGGCTGATTGGGCGTCTAATCTTCTCTTTGTACAAGTTTATAACCAAGTTAGTATAATTATAATCGCGCGCCTTTTAGGTCTTGTTTGATAATCATTTGTTAGAATGATAGCTCCGTTGGGTCGT Coding sequence (CDS)
ATGGCGAAGCTGGCGGAACAGGAATCTCAGAGCAAGGAGAACATGAAGAACGCCATGTTAAAGCACGAGCAGACATTTCGTCATCAAGTGTATGAACTCCACAGATTGTACAGAATTCAGAAGCTTTTGATGAAGAACATAACAGAAAACAGAGGAAAAACAGAGAGATGGGAAGTGAAAAATGAAGAAGAAGAAGAAGATGATGATGAAAAGGATAGTGATTTTATTGAAGAAAGTGAGGTTGAATTGACATTGGGTCCTTCAAATTACAGCAATCAAGTTGGTGGAGGAAGGAGAAGAAGAAGAAAGAGCTGCTTCTCTTCTTCTTCTTCGTCTTCAACCACAGGCTCTGCTCAAAAAAATCGAAGCTTTTACAGACATGGTGAGCTTGTTGGTGGCTCTGAAATGGGGTTTGTGGGGTTTCTTGAAGATGAGATGAGGCTTTCACAGCACCATCCAAATCCATGGCTTTGTCAACCTCTAACCCTTAATCTCACTTCATAA Protein sequence
MAKLAEQESQSKENMKNAMLKHEQTFRHQVYELHRLYRIQKLLMKNITENRGKTERWEVKNEEEEEDDDEKDSDFIEESEVELTLGPSNYSNQVGGGRRRRRKSCFSSSSSSSTTGSAQKNRSFYRHGELVGGSEMGFVGFLEDEMRLSQHHPNPWLCQPLTLNLTS
Homology
BLAST of CmaCh02G005120 vs. TAIR 10
Match:
AT5G67390.1 (unknown protein; BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 65.1 bits (157), Expect = 6.2e-11
Identity = 61/172 (35.47%), Postives = 88/172 (51.16%), Query Frame = 0
Query: 12 KENMKNAMLKHEQTFRHQVYELHRLYRIQKLLMKNITENRGKTERWEVKNE-----EEEE 71 K+ MK AMLKHE+TF+ QVYELHRLY++QK+LMKN+ N+ T+ V + + Sbjct: 10 KQCMKMAMLKHEETFKQQVYELHRLYQVQKILMKNMEINKFTTKNNHVNSGLGTFIRRVD 69 Query: 72 DDDEKDSDF---------IEESEVELTLGPSNYSNQVGGGRRRRRKSCFSSSSSSSTTGS 131 ++ ++ ++F ++ESE+ELTLGPS Y G R K +S GS Sbjct: 70 NEIDRPANFSGGNNNIEIMDESEIELTLGPSCYG---GDEMMRMNKKKKKNSLPEMMDGS 129 Query: 132 AQKNRSFYRHGELVGGSEMGFVGFLEDEMR----LSQHHPNPWLCQPLTLNL 166 R + GS LE+++R + PWL Q LTLN+ Sbjct: 130 LNSGRRSFSSSST--GSSNNNNNNLEEQVRQERMMKHQKQQPWL-QALTLNV 175
BLAST of CmaCh02G005120 vs. TAIR 10
Match:
AT5G67390.2 (unknown protein; BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1); Has 186 Blast hits to 186 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). )
HSP 1 Score: 65.1 bits (157), Expect = 6.2e-11
Identity = 61/172 (35.47%), Postives = 88/172 (51.16%), Query Frame = 0
Query: 12 KENMKNAMLKHEQTFRHQVYELHRLYRIQKLLMKNITENRGKTERWEVKNE-----EEEE 71 K+ MK AMLKHE+TF+ QVYELHRLY++QK+LMKN+ N+ T+ V + + Sbjct: 10 KQCMKMAMLKHEETFKQQVYELHRLYQVQKILMKNMEINKFTTKNNHVNSGLGTFIRRVD 69 Query: 72 DDDEKDSDF---------IEESEVELTLGPSNYSNQVGGGRRRRRKSCFSSSSSSSTTGS 131 ++ ++ ++F ++ESE+ELTLGPS Y G R K +S GS Sbjct: 70 NEIDRPANFSGGNNNIEIMDESEIELTLGPSCYG---GDEMMRMNKKKKKNSLPEMMDGS 129 Query: 132 AQKNRSFYRHGELVGGSEMGFVGFLEDEMR----LSQHHPNPWLCQPLTLNL 166 R + GS LE+++R + PWL Q LTLN+ Sbjct: 130 LNSGRRSFSSSST--GSSNNNNNNLEEQVRQERMMKHQKQQPWL-QALTLNV 175
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
AT5G67390.1 6.2e-11 35.47 unknown protein; BEST Arabidopsis thaliana protein match is: Plant protein of un... [more]
AT5G67390.2 6.2e-11 35.47 unknown protein; BEST Arabidopsis thaliana protein match is: Plant protein of un... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
G G A A G C T G T T G T T T G T C A C T C T C T C T T G C T T G C A T C T C A T T T C T C T C T T T C A G G C A A A A A T C C A A A G C T C T C T T T C T T C C A T C A T C C A T T T C T A A C A C C C A A A A C A A A G C T C C A A A A T T G G C A C A T C A A T G G C G A A G C T G G C G G A A C A G G A A T C T C A G A G C A A G G A G A A C A T G A A G A A C G C C A T G T T A A A G C A C G A G C A G A C A T T T C G T C A T C A A G T G T A T G A A C T C C A C A G A T T G T A C A G A A T T C A G A A G C T T T T G A T G A A G A A C A T A A C A G A A A A C A G A G G A A A A A C A G A G A G A T G G G A A G T G A A A A A T G A A G A A G A A G A A G A A G A T G A T G A T G A A A A G G A T A G T G A T T T T A T T G A A G A A A G T G A G G T T G A A T T G A C A T T G G G T C C T T C A A A T T A C A G C A A T C A A G T T G G T G G A G G A A G G A G A A G A A G A A G A A A G A G C T G C T T C T C T T C T T C T T C T T C G T C T T C A A C C A C A G G C T C T G C T C A A A A A A A T C G A A G C T T T T A C A G A C A T G G T G A G C T T G T T G G T G G C T C T G A A A T G G G G T T T G T G G G G T T T C T T G A A G A T G A G A T G A G G C T T T C A C A G C A C C A T C C A A A T C C A T G G C T T T G T C A A C C T C T A A C C C T T A A T C T C A C T T C A T A A A C A C T T C G A T T C T T T T A T G T T C T G C T T A T T T T T T A G T T T T C T T G G C T G A T T G G G C G T C T A A T C T T C T C T T T G T A C A A G T T T A T A A C C A A G T T A G T A T A A T T A T A A T C G C G C G C C T T T T A G G T C T T G T T T G A T A A T C A T T T G T T A G A A T G A T A G C T C C G T T G G G T C G T 100 200 300 400 500 600 700 Score = Score = Score = Score = Score = Score = Sequence Coil mobidb-lite mobidb-lite mobidb-lite PTHR33167 PTHR33167:SF45
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 5..25
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 61..79
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 106..121
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 51..121
None No IPR available PANTHER PTHR33167 FAMILY NOT NAMED coord: 9..166
None No IPR available PANTHER PTHR33167:SF45 BNAC02G16680D PROTEIN coord: 9..166
Relationships
The following mRNA feature(s) are a part of this gene: