Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCTCGTTCGCGGGGAGGCTTGAGAACTTTGGTCCCCTTGAAGACGCAGCCTTTCTATTTCGTAATATTGCTGATGAAGCCGACGTTAAAGTCACATACAAGCGGTTCTCGTTAGTCACCTCCAGCCGTCATACGCCCTTTCGCTTCGTAGCAGAACTCCATATTTTGCCCCATTTTTTCGCCCACTATTCTATTGGTATCCATCGGAATATCAATTCAAGCATTTCTCTCCCACTTTTCCATACATTTATTCGGAACGCTAGAAATTATTATTCTCAATTGACCATCCTTATGGAACCACAAGTCATGGCCCTTAAATTTCGTAATTTCAGTTAG
mRNA sequence
ATGCGCTCGTTCGCGGGGAGGCTTGAGAACTTTGGTCCCCTTGAAGACGCAGCCTTTCTATTTCGTAATATTGCTGATGAAGCCGACGTTAAAGTCACATACAAGCGGTTCTCGTTAGTCACCTCCAGCCGTCATACGCCCTTTCGCTTCGTAGCAGAACTCCATATTTTGCCCCATTTTTTCGCCCACTATTCTATTGGTATCCATCGGAATATCAATTCAAGCATTTCTCTCCCACTTTTCCATACATTTATTCGGAACGCTAGAAATTATTATTCTCAATTGACCATCCTTATGGAACCACAAGTCATGGCCCTTAAATTTCGTAATTTCAGTTAG
Coding sequence (CDS)
ATGCGCTCGTTCGCGGGGAGGCTTGAGAACTTTGGTCCCCTTGAAGACGCAGCCTTTCTATTTCGTAATATTGCTGATGAAGCCGACGTTAAAGTCACATACAAGCGGTTCTCGTTAGTCACCTCCAGCCGTCATACGCCCTTTCGCTTCGTAGCAGAACTCCATATTTTGCCCCATTTTTTCGCCCACTATTCTATTGGTATCCATCGGAATATCAATTCAAGCATTTCTCTCCCACTTTTCCATACATTTATTCGGAACGCTAGAAATTATTATTCTCAATTGACCATCCTTATGGAACCACAAGTCATGGCCCTTAAATTTCGTAATTTCAGTTAG
Protein sequence
MRSFAGRLENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAHYSIGIHRNINSSISLPLFHTFIRNARNYYSQLTILMEPQVMALKFRNFS
Homology
BLAST of ClCG06G004100 vs. NCBI nr
Match:
XP_008458264.1 (PREDICTED: uncharacterized protein LOC103497732 [Cucumis melo])
HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 0
Query: 8 LENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAHYSIG 67
L NF PL DAA LF NI EADVKV+ + S++T+ R FVA LHI FF Y
Sbjct: 9 LHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSR--WFVAVLHIWEPFFNDYY-- 68
Query: 68 IHRNINSSISLPLFHTFIRNAR-NYYSQLTILMEP--QVMALKFRN 111
I ++I S ISLP FH + AR ++ S + I M+ + L+F+N
Sbjct: 69 IDKDITSRISLPTFHCHMNRARKDHCSSMNIRMQKGHNYLFLEFKN 110
BLAST of ClCG06G004100 vs. NCBI nr
Match:
XP_023006008.1 (uncharacterized protein LOC111498886 [Cucurbita maxima])
HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 0
Query: 4 FAGRLENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAH 63
F +LE+ PL DA FLF ++ E DVK T+ FSL S + RF+ +L I FA
Sbjct: 2 FLVKLEDVTPLSDAVFLFNQLSLEGDVKFTHNMFSLTVS--NASIRFIIKLDIWDELFAE 61
Query: 64 YSIGIHRNINSSISLPLFHTFIRNARNYYSQLTILMEPQV-MALKFRN 111
YS + N ISLP F F+ + +Y S ++ E + M L+F N
Sbjct: 62 YS--VDPNQCWRISLPTFQKFLWDGESYSSMTFLMHETRSRMVLEFHN 105
BLAST of ClCG06G004100 vs. NCBI nr
Match:
XP_023006010.1 (uncharacterized protein LOC111498887 [Cucurbita maxima])
HSP 1 Score: 55.8 bits (133), Expect = 2.7e-04
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 0
Query: 4 FAGRLENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAH 63
F RL +F PL +A L I++EAD+K + +FSL+TS + RFVA I FFA+
Sbjct: 2 FLVRLHHFDPLREATSLLAQISNEADLKFSSSKFSLITS--YPSRRFVATFQISHRFFAN 61
Query: 64 YSIGIHRNINSSISLPLFHTFIRNARNYYSQLTI 98
YS + RN +S +SL F+ + + ++S +TI
Sbjct: 62 YS--VDRNHSSRVSLQSFYDAMYDG-IFFSSMTI 90
BLAST of ClCG06G004100 vs. NCBI nr
Match:
KAG6575164.1 (hypothetical protein SDJN03_25803, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 55.1 bits (131), Expect = 4.6e-04
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 0
Query: 4 FAGRLENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAH 63
F +LE+ PL DA FLF ++ EADVK T+ FSL S + RF+ +L I FA
Sbjct: 2 FLVKLEDVTPLSDAVFLFNQLSLEADVKFTHNMFSLTVS--NASIRFIIKLDIWDELFAE 61
Query: 64 YSIGIHRNINSSISLPLFHTFIRNARNYYSQLTILMEPQV-MALKFRN 111
YS + N ISL F + + +Y S ++ E + M L+F N
Sbjct: 62 YS--VDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHN 105
BLAST of ClCG06G004100 vs. NCBI nr
Match:
XP_022958858.1 (uncharacterized protein LOC111460013 [Cucurbita moschata])
HSP 1 Score: 55.1 bits (131), Expect = 4.6e-04
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 0
Query: 4 FAGRLENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAH 63
F +LE+ PL DA FLF ++ EADVK T+ FSL S + RF+ +L I FA
Sbjct: 17 FLVKLEDVTPLSDAVFLFNQLSLEADVKFTHNMFSLTVS--NASIRFIIKLDIWDELFAE 76
Query: 64 YSIGIHRNINSSISLPLFHTFIRNARNYYSQLTILMEPQV-MALKFRN 111
YS + N ISL F + + +Y S ++ E + M L+F N
Sbjct: 77 YS--VDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHN 120
BLAST of ClCG06G004100 vs. ExPASy TrEMBL
Match:
A0A1S3C7K5 (uncharacterized protein LOC103497732 OS=Cucumis melo OX=3656 GN=LOC103497732 PE=4 SV=1)
HSP 1 Score: 67.0 bits (162), Expect = 5.7e-08
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 0
Query: 8 LENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAHYSIG 67
L NF PL DAA LF NI EADVKV+ + S++T+ R FVA LHI FF Y
Sbjct: 9 LHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSR--WFVAVLHIWEPFFNDYY-- 68
Query: 68 IHRNINSSISLPLFHTFIRNAR-NYYSQLTILMEP--QVMALKFRN 111
I ++I S ISLP FH + AR ++ S + I M+ + L+F+N
Sbjct: 69 IDKDITSRISLPTFHCHMNRARKDHCSSMNIRMQKGHNYLFLEFKN 110
BLAST of ClCG06G004100 vs. ExPASy TrEMBL
Match:
A0A0A0KB79 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002360 PE=4 SV=1)
HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 40/84 (47.62%), Postives = 50/84 (59.52%), Query Frame = 0
Query: 8 LENFGPLEDAAFLFRNIADEADVKVTYKRFSLV-TSSRHTPFRFVAELHILPHFFAHYSI 67
++NF PL DAA L NIA EADV+++ +FS++ T H FVA LHI FFA+Y I
Sbjct: 11 IDNFSPLADAAALLTNIAHEADVEISRTQFSIIATGYSHW---FVASLHIWEPFFANYYI 70
Query: 68 GIHRNINSSISLPLFHTFIRNARN 91
I S ISLP H + ARN
Sbjct: 71 D-EDPITSRISLPALHHSLNRARN 90
BLAST of ClCG06G004100 vs. ExPASy TrEMBL
Match:
A0A6J1L3R4 (uncharacterized protein LOC111498886 OS=Cucurbita maxima OX=3661 GN=LOC111498886 PE=4 SV=1)
HSP 1 Score: 60.5 bits (145), Expect = 5.3e-06
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 0
Query: 4 FAGRLENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAH 63
F +LE+ PL DA FLF ++ E DVK T+ FSL S + RF+ +L I FA
Sbjct: 2 FLVKLEDVTPLSDAVFLFNQLSLEGDVKFTHNMFSLTVS--NASIRFIIKLDIWDELFAE 61
Query: 64 YSIGIHRNINSSISLPLFHTFIRNARNYYSQLTILMEPQV-MALKFRN 111
YS + N ISLP F F+ + +Y S ++ E + M L+F N
Sbjct: 62 YS--VDPNQCWRISLPTFQKFLWDGESYSSMTFLMHETRSRMVLEFHN 105
BLAST of ClCG06G004100 vs. ExPASy TrEMBL
Match:
A0A6J1KZ05 (uncharacterized protein LOC111498887 OS=Cucurbita maxima OX=3661 GN=LOC111498887 PE=4 SV=1)
HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 0
Query: 4 FAGRLENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAH 63
F RL +F PL +A L I++EAD+K + +FSL+TS + RFVA I FFA+
Sbjct: 2 FLVRLHHFDPLREATSLLAQISNEADLKFSSSKFSLITS--YPSRRFVATFQISHRFFAN 61
Query: 64 YSIGIHRNINSSISLPLFHTFIRNARNYYSQLTI 98
YS + RN +S +SL F+ + + ++S +TI
Sbjct: 62 YS--VDRNHSSRVSLQSFYDAMYDG-IFFSSMTI 90
BLAST of ClCG06G004100 vs. ExPASy TrEMBL
Match:
A0A6J1H490 (uncharacterized protein LOC111460013 OS=Cucurbita moschata OX=3662 GN=LOC111460013 PE=4 SV=1)
HSP 1 Score: 55.1 bits (131), Expect = 2.2e-04
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 0
Query: 4 FAGRLENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAH 63
F +LE+ PL DA FLF ++ EADVK T+ FSL S + RF+ +L I FA
Sbjct: 17 FLVKLEDVTPLSDAVFLFNQLSLEADVKFTHNMFSLTVS--NASIRFIIKLDIWDELFAE 76
Query: 64 YSIGIHRNINSSISLPLFHTFIRNARNYYSQLTILMEPQV-MALKFRN 111
YS + N ISL F + + +Y S ++ E + M L+F N
Sbjct: 77 YS--VDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHN 120
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_008458264.1 | 1.2e-07 | 44.34 | PREDICTED: uncharacterized protein LOC103497732 [Cucumis melo] | [more] |
XP_023006008.1 | 1.1e-05 | 37.96 | uncharacterized protein LOC111498886 [Cucurbita maxima] | [more] |
XP_023006010.1 | 2.7e-04 | 39.36 | uncharacterized protein LOC111498887 [Cucurbita maxima] | [more] |
KAG6575164.1 | 4.6e-04 | 37.04 | hypothetical protein SDJN03_25803, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022958858.1 | 4.6e-04 | 37.04 | uncharacterized protein LOC111460013 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3C7K5 | 5.7e-08 | 44.34 | uncharacterized protein LOC103497732 OS=Cucumis melo OX=3656 GN=LOC103497732 PE=... | [more] |
A0A0A0KB79 | 1.1e-06 | 47.62 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002360 PE=4 SV=1 | [more] |
A0A6J1L3R4 | 5.3e-06 | 37.96 | uncharacterized protein LOC111498886 OS=Cucurbita maxima OX=3661 GN=LOC111498886... | [more] |
A0A6J1KZ05 | 1.3e-04 | 39.36 | uncharacterized protein LOC111498887 OS=Cucurbita maxima OX=3661 GN=LOC111498887... | [more] |
A0A6J1H490 | 2.2e-04 | 37.04 | uncharacterized protein LOC111460013 OS=Cucurbita moschata OX=3662 GN=LOC1114600... | [more] |
Match Name | E-value | Identity | Description | |