SwissProt blast output of UN60876
BLASTX 7.6.2
Query= UN60876 /QuerySize=794
(793 letters)
Database: Uniprot/SwissProt;
537,505 sequences; 190,795,139 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49756|RBM25_HUMAN RNA-binding protein 25 OS=Homo sapiens GN=... 72 5e-012
sp|B2RY56|RBM25_MOUSE RNA-binding protein 25 OS=Mus musculus GN=... 65 5e-010
sp|Q0P5D2|CPSF6_BOVIN Cleavage and polyadenylation specificity f... 65 6e-010
sp|Q5ZL34|CPSF6_CHICK Cleavage and polyadenylation specificity f... 65 6e-010
sp|Q16630|CPSF6_HUMAN Cleavage and polyadenylation specificity f... 65 6e-010
sp|Q6NVF9|CPSF6_MOUSE Cleavage and polyadenylation specificity f... 65 6e-010
sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa O... 64 1e-009
sp|Q5NVH8|CPSF6_PONAB Cleavage and polyadenylation specificity f... 64 1e-009
sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa O... 62 3e-009
sp|Q6DDW4|CPSF6_XENLA Cleavage and polyadenylation specificity f... 62 4e-009
sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musc... 61 9e-009
sp|Q551H4|FRAY2_DICDI Serine/threonine-protein kinase fray2 OS=D... 60 1e-008
sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 ... 58 6e-008
sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 ... 58 6e-008
sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 ... 58 6e-008
sp|A8WT19|CWC22_CAEBR Pre-mRNA-splicing factor CWC22 homolog OS=... 57 1e-007
sp|Q6NWC6|CPSF6_DANRE Cleavage and polyadenylation specificity f... 56 2e-007
>sp|P49756|RBM25_HUMAN RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1
SV=3
Length = 843
Score = 72 bits (174), Expect = 5e-012
Identities = 38/62 (61%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Frame = -2
Query: 336 DRDRRERSRDRGREREERESSKNRRRSRSRDRDRGRERERDRDYDYNRDREYGRER-SDR 160
+R+RRER R+R RER ERE K R R R RDRDR R +ERDRD D RDR+ RER SDR
Sbjct: 319 ERERRERERERERER-EREKEKERERERERDRDRDRTKERDRDRDRERDRDRDRERSSDR 377
Query: 159 HR 154
++
Sbjct: 378 NK 379
Score = 65 bits (158), Expect = 4e-010
Identities = 31/61 (50%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Frame = -2
Query: 336 DRDRRERSRDRGREREERESSKNRRRSRSRDRDRGRERERDRDYDYNRDREYGRERSDRH 157
+++RRER R+R RERE RE + R R R R++++ RERER+RD D +R +E R+R DR
Sbjct: 306 EKERRERERERERERERREREREREREREREKEKERERERERDRDRDRTKERDRDR-DRE 364
Query: 156 R 154
R
Sbjct: 365 R 365
>sp|B2RY56|RBM25_MOUSE RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1
SV=1
Length = 841
Score = 65 bits (157), Expect = 5e-010
Identities = 32/61 (52%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Frame = -2
Query: 336 DRDRRERSRDRGREREERESSKNRRRSRSRDRDRGRERERDRDYDYNRDREYGRERSDRH 157
+R RER R+R RER ERE + R R R ++++R RERERDRD D ++R+ RER DR
Sbjct: 310 ERRERERERERERERREREREREREREREKEKERERERERDRDRDRTKERDRDRER-DRD 368
Query: 156 R 154
R
Sbjct: 369 R 369
>sp|Q0P5D2|CPSF6_BOVIN Cleavage and polyadenylation specificity factor subunit 6
OS=Bos taurus GN=CPSF6 PE=2 SV=1
Length = 551
Score = 65 bits (156), Expect = 6e-010
Identities = 36/73 (49%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = -2
Query: 366 GWEVEELGMSDRDRRERSRDRGREREERESSKNRRRSRSRD--RDRGRERERDRDYDYNR 193
G E + G R R R RD R RE+ K+R R R D R+R RERER RD D +R
Sbjct: 479 GIESKSYGSGSRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDR 538
Query: 192 DREYGRERSDRHR 154
DRE RER RHR
Sbjct: 539 DRERDREREYRHR 551
>sp|Q5ZL34|CPSF6_CHICK Cleavage and polyadenylation specificity factor subunit 6
OS=Gallus gallus GN=CPSF6 PE=2 SV=1
Length = 551
Score = 65 bits (156), Expect = 6e-010
Identities = 36/73 (49%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = -2
Query: 366 GWEVEELGMSDRDRRERSRDRGREREERESSKNRRRSRSRD--RDRGRERERDRDYDYNR 193
G E + G R R R RD R RE+ K+R R R D R+R RERER RD D +R
Sbjct: 479 GIESKSYGSGSRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDR 538
Query: 192 DREYGRERSDRHR 154
DRE RER RHR
Sbjct: 539 DRERDREREYRHR 551
>sp|Q16630|CPSF6_HUMAN Cleavage and polyadenylation specificity factor subunit 6
OS=Homo sapiens GN=CPSF6 PE=1 SV=2
Length = 551
Score = 65 bits (156), Expect = 6e-010
Identities = 36/73 (49%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = -2
Query: 366 GWEVEELGMSDRDRRERSRDRGREREERESSKNRRRSRSRD--RDRGRERERDRDYDYNR 193
G E + G R R R RD R RE+ K+R R R D R+R RERER RD D +R
Sbjct: 479 GIESKSYGSGSRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDR 538
Query: 192 DREYGRERSDRHR 154
DRE RER RHR
Sbjct: 539 DRERDREREYRHR 551
>sp|Q6NVF9|CPSF6_MOUSE Cleavage and polyadenylation specificity factor subunit 6
OS=Mus musculus GN=Cpsf6 PE=1 SV=1
Length = 551
Score = 65 bits (156), Expect = 6e-010
Identities = 36/73 (49%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = -2
Query: 366 GWEVEELGMSDRDRRERSRDRGREREERESSKNRRRSRSRD--RDRGRERERDRDYDYNR 193
G E + G R R R RD R RE+ K+R R R D R+R RERER RD D +R
Sbjct: 479 GIESKSYGSGSRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDR 538
Query: 192 DREYGRERSDRHR 154
DRE RER RHR
Sbjct: 539 DRERDREREYRHR 551
>sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus
tropicalis GN=snrnp70 PE=2 SV=1
Length = 471
Score = 64 bits (154), Expect = 1e-009
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 5/64 (7%)
Frame = -2
Query: 336 DRDR-----RERSRDRGREREERESSKNRRRSRSRDRDRGRERERDRDYDYNRDREYGRE 172
DRDR ++R +DR R+R+ R S ++R R + R+RDR R R+RDRD D +RD + R+
Sbjct: 356 DRDRERDREKDRDKDRDRDRDRRRSHRDRERDKDRERDRDRRRDRDRDRDRDRDHKRERD 415
Query: 171 RSDR 160
R DR
Sbjct: 416 RGDR 419
>sp|Q5NVH8|CPSF6_PONAB Cleavage and polyadenylation specificity factor subunit 6
OS=Pongo abelii GN=CPSF6 PE=2 SV=1
Length = 552
Score = 64 bits (153), Expect = 1e-009
Identities = 37/75 (49%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Frame = -2
Query: 366 GWEVEELGMSDRDRRERSRDRGREREERESSKNRRRSRSRD----RDRGRERERDRDYDY 199
G E + G R RRERSR+R R +S +++ RSR R R+R RERER RD D
Sbjct: 479 GIESKSYGSGSR-RRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDR 537
Query: 198 NRDREYGRERSDRHR 154
+RDRE RER RHR
Sbjct: 538 DRDRERDREREYRHR 552
>sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus
laevis GN=snrnp70 PE=2 SV=1
Length = 471
Score = 62 bits (150), Expect = 3e-009
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Frame = -2
Query: 336 DRDR----RERSRDRGREREERESSKNRRRSRSRDRDRGRERERDRDYDYNRDREYGRER 169
DRDR ++R +DR R+R+ R S ++R R + RDRDR R R+RDRD + ++D + R+R
Sbjct: 357 DRDREKGEKDRDKDRDRDRDRRRSHRDRDREKDRDRDRDRRRDRDRDRERDKDHKRERDR 416
Query: 168 SDR 160
DR
Sbjct: 417 GDR 419
>sp|Q6DDW4|CPSF6_XENLA Cleavage and polyadenylation specificity factor subunit 6
OS=Xenopus laevis GN=cpsf6 PE=2 SV=1
Length = 548
Score = 62 bits (149), Expect = 4e-009
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Frame = -2
Query: 366 GWEVEELGMSDRDRRERSRDRGREREERESSKNRRRSRSRD----RDRGRERERDRDYDY 199
G E + G R RRERSR+R R +S +++ RSR R R+R RERER RD +
Sbjct: 475 GIESKSYGSGSR-RRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRER 533
Query: 198 NRDREYGRERSDRHR 154
+RDRE RER RHR
Sbjct: 534 DRDRERDREREYRHR 548
>sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8
PE=2 SV=1
Length = 1244
Score = 61 bits (146), Expect = 9e-009
Identities = 29/54 (53%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Frame = -2
Query: 312 RDRGREREERESSKNRRRSRSRDRDRGRERERDRDYDYNRDREYGRERS-DRHR 154
+++ R+ E R+ +K ++RSRSRDRDR R+R+RDRD D +RDR+ RER DR R
Sbjct: 159 QEKQRDPEHRDRTKKKKRSRSRDRDRDRDRDRDRDRDRDRDRDKDRERDRDRER 212
>sp|Q551H4|FRAY2_DICDI Serine/threonine-protein kinase fray2 OS=Dictyostelium
discoideum GN=fray2 PE=3 SV=1
Length = 1028
Score = 60 bits (145), Expect = 1e-008
Identities = 32/57 (56%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = -2
Query: 324 RERSRDRGREREERESSKNRRRSRSRDRDRGRERERDRDYDYNRDREYGRERSDRHR 154
R SRDR RER+ S++R R R R+RDR RER+RDR D +RDR RER DR R
Sbjct: 751 RNVSRDRERERDRHNRSRDRDRERERERDRDRERDRDRSRDRSRDRSRDRER-DRSR 806
>sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens
GN=DDX46 PE=1 SV=2
Length = 1031
Score = 58 bits (139), Expect = 6e-008
Identities = 32/60 (53%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = -2
Query: 336 DRD-RRERSRDRGREREERESSKNRRRSRSRDRDRGRERERDRDYDYNRDREYGRERSDR 160
DRD RRERSR R + R K RRSRSR+RDR RER R R D R R R R R
Sbjct: 44 DRDRRRERSRSRDKRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSR 103
>sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus
GN=Ddx46 PE=1 SV=2
Length = 1032
Score = 58 bits (139), Expect = 6e-008
Identities = 32/60 (53%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = -2
Query: 336 DRD-RRERSRDRGREREERESSKNRRRSRSRDRDRGRERERDRDYDYNRDREYGRERSDR 160
DRD RRERSR R + R K RRSRSR+RDR RER R R D R R R R R
Sbjct: 44 DRDRRRERSRSRDKRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSR 103
>sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii
GN=DDX46 PE=2 SV=1
Length = 1032
Score = 58 bits (139), Expect = 6e-008
Identities = 32/60 (53%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = -2
Query: 336 DRD-RRERSRDRGREREERESSKNRRRSRSRDRDRGRERERDRDYDYNRDREYGRERSDR 160
DRD RRERSR R + R K RRSRSR+RDR RER R R D R R R R R
Sbjct: 44 DRDRRRERSRSRDKRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSR 103
>sp|A8WT19|CWC22_CAEBR Pre-mRNA-splicing factor CWC22 homolog OS=Caenorhabditis
briggsae GN=let-858 PE=3 SV=2
Length = 935
Score = 57 bits (137), Expect = 1e-007
Identities = 29/63 (46%), Positives = 37/63 (58%)
Frame = -2
Query: 336 DRDRRERSRDRGREREERESSKNRRRSRSRDRDRGRERERDRDYDYNRDREYGRERSDRH 157
DRDRR+RS +R R+ +E S++R R RDR R RER R +D +R RE DR
Sbjct: 873 DRDRRDRSEERDNRRDRKERSRSRDRRDHRDRSRSRERNEKRRHDDDRRREEKVGSDDRR 932
Query: 156 RYH 148
R H
Sbjct: 933 RRH 935
>sp|Q6NWC6|CPSF6_DANRE Cleavage and polyadenylation specificity factor subunit 6
OS=Danio rerio GN=cpsf6 PE=2 SV=1
Length = 545
Score = 56 bits (134), Expect = 2e-007
Identities = 27/61 (44%), Positives = 35/61 (57%)
Frame = -2
Query: 327 RRERSRDRGREREERESSKNRRRSRSRDRDRGRERERDRDYDYNRDREYGRERSDRHRYH 148
RRERSR+R R +S +++ RSR R D RER R+RD RDR+ R+R Y
Sbjct: 484 RRERSRERDHSRSREKSRRHKSRSRDRHEDYYRERSRERDRHRERDRDRERDREREREYR 543
Query: 147 H 145
H
Sbjct: 544 H 544
Database: Uniprot/SwissProt
Posted date: Thu Sep 27 17:53:50 2012
Number of letters in database: 190,795,139
Number of sequences in database: 537,505
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,650,946,412
Number of Sequences: 537505
Number of Extensions: 55650946412
Number of Successful Extensions: 238582786
Number of sequences better than 0.0: 0
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