Chrysanthenum transcriptome database

GenBank blast output of UN44993


BLASTX 7.6.2

Query= UN44993 /QuerySize=742
        (741 letters)

Database: GenBank nr;
          20,571,509 sequences; 7,061,663,739 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

gi|359480541|ref|XP_003632486.1| PREDICTED: protein SHORT-ROOT-l...    113   5e-023
gi|225467634|ref|XP_002267068.1| PREDICTED: protein SHORT-ROOT-l...     94   3e-017
gi|296087307|emb|CBI33681.3| unnamed protein product [Vitis vini...     94   3e-017
gi|357476485|ref|XP_003608528.1| GRAS family transcription facto...     88   2e-015
gi|356540628|ref|XP_003538789.1| PREDICTED: protein SHORT-ROOT-l...     87   2e-015
gi|158962472|dbj|BAF91723.1| putative SHORT-ROOT protein [Ipomoe...     87   3e-015
gi|224114479|ref|XP_002332364.1| GRAS family transcription facto...     87   4e-015
gi|255568605|ref|XP_002525276.1| Chitin-inducible gibberellin-re...     83   4e-014
gi|242390093|dbj|BAH80549.1| transcription factor GRAS family pr...     82   1e-013
gi|147772860|emb|CAN75901.1| hypothetical protein VITISV_001968 ...     81   2e-013

>gi|359480541|ref|XP_003632486.1| PREDICTED: protein SHORT-ROOT-like isoform 2
        [Vitis vinifera]

          Length = 509

 Score =  113 bits (281), Expect = 5e-023
 Identities = 62/161 (38%), Positives = 80/161 (49%), Gaps = 14/161 (8%)
 Frame = -1

Query: 474 NYQQPQEQEECFNFFMDEEDYXXXXRXX---XXXXXXXXXXXXXXXXXXLSNXXXXXXXX 304
           ++   QE EECFNFFMDEED+                             ++        
Sbjct:  32 HHHHHQEDEECFNFFMDEEDFSSSSSKHYYPYQQQTHPSTTTTPTTTNTQTHPSTTTTPT 91

Query: 303 XXXXXXLSHYGFSTSEHQQSSDPNINYSYSPARDVTMEYSNSFTTNTWXXXXXXXXXXXX 124
                  +H+ F  +E          +S+SPARD+ +E+ NS  +  W            
Sbjct:  92 TTNTSTPTHHAFEPTE----------FSFSPARDLHLEF-NSSASGKWASEILLETARAI 140

Query: 123 XXKNSSRLQQLMWMLNELSSPYGDTDQKLSSYFLQALFSRM 1
             KNS+R+QQLMWMLNELSSPYGDTDQKL++YFLQALFSRM
Sbjct: 141 ADKNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRM 181

>gi|225467634|ref|XP_002267068.1| PREDICTED: protein SHORT-ROOT-like isoform 1
        [Vitis vinifera]

          Length = 494

 Score =  94 bits (231), Expect = 3e-017
 Identities = 45/75 (60%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = -1

Query: 225 YSYSPARDVTMEYSNSFTTNTWXXXXXXXXXXXXXXKNSSRLQQLMWMLNELSSPYGDTD 46
           +S+SPARD+ +E+ NS  +  W              KNS+R+QQLMWMLNELSSPYGDTD
Sbjct:  93 FSFSPARDLHLEF-NSSASGKWASEILLETARAIADKNSARVQQLMWMLNELSSPYGDTD 151

Query:  45 QKLSSYFLQALFSRM 1
           QKL++YFLQALFSRM
Sbjct: 152 QKLAAYFLQALFSRM 166

>gi|296087307|emb|CBI33681.3| unnamed protein product [Vitis vinifera]

          Length = 419

 Score =  94 bits (231), Expect = 3e-017
 Identities = 45/75 (60%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = -1

Query: 225 YSYSPARDVTMEYSNSFTTNTWXXXXXXXXXXXXXXKNSSRLQQLMWMLNELSSPYGDTD 46
           +S+SPARD+ +E+ NS  +  W              KNS+R+QQLMWMLNELSSPYGDTD
Sbjct:  40 FSFSPARDLHLEF-NSSASGKWASEILLETARAIADKNSARVQQLMWMLNELSSPYGDTD 98

Query:  45 QKLSSYFLQALFSRM 1
           QKL++YFLQALFSRM
Sbjct:  99 QKLAAYFLQALFSRM 113

>gi|357476485|ref|XP_003608528.1| GRAS family transcription factor [Medicago
        truncatula]

          Length = 504

 Score =  88 bits (216), Expect = 2e-015
 Identities = 42/76 (55%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
 Frame = -1

Query: 228 NYSYSPARDVTMEYSNSFTTNTWXXXXXXXXXXXXXXKNSSRLQQLMWMLNELSSPYGDT 49
           NYS+SP+ D    ++  F+ ++W               N++R+QQLMWMLNELS+PYGDT
Sbjct: 110 NYSFSPSHDY---FNFEFSGHSWSQNILLETARAFSDNNTNRIQQLMWMLNELSTPYGDT 166

Query:  48 DQKLSSYFLQALFSRM 1
           DQKLSSYFLQALFSRM
Sbjct: 167 DQKLSSYFLQALFSRM 182

>gi|356540628|ref|XP_003538789.1| PREDICTED: protein SHORT-ROOT-like [Glycine
        max]

          Length = 482

 Score =  87 bits (215), Expect = 2e-015
 Identities = 44/93 (47%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
 Frame = -1

Query: 267 STSEHQQSSDPN----INYSYSPARDVTMEYSNSFTTNTWXXXXXXXXXXXXXXKNSSRL 100
           S+S+H     P+     ++S+SP   V + +   F++  W              KN++RL
Sbjct:  65 SSSKHYYPYQPHPPSTTDHSFSPTPGVDVVFPFEFSSGKWAQDILLETARAVADKNTTRL 124

Query:  99 QQLMWMLNELSSPYGDTDQKLSSYFLQALFSRM 1
           QQLMWMLNELSSPYGDTDQKL+SYFLQA FSR+
Sbjct: 125 QQLMWMLNELSSPYGDTDQKLASYFLQAFFSRI 157

>gi|158962472|dbj|BAF91723.1| putative SHORT-ROOT protein [Ipomoea nil]

          Length = 505

 Score =  87 bits (214), Expect = 3e-015
 Identities = 45/83 (54%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
 Frame = -1

Query: 246 SSDPNINYSY-SPARDVTMEYSNSFTTNTWXXXXXXXXXXXXXXKNSSRLQQLMWMLNEL 70
           SS P  +YS+  P  D  +E+ ++F +  W              KNS R+QQLMWMLNEL
Sbjct:  89 SSTPPHSYSHPQPTFDPNLEFGSAF-SGKWATEILVETARAVAEKNSGRVQQLMWMLNEL 147

Query:  69 SSPYGDTDQKLSSYFLQALFSRM 1
           SSPYGDTDQKL++YFLQALFSRM
Sbjct: 148 SSPYGDTDQKLAAYFLQALFSRM 170

>gi|224114479|ref|XP_002332364.1| GRAS family transcription factor [Populus
        trichocarpa]

          Length = 510

 Score =  87 bits (213), Expect = 4e-015
 Identities = 42/76 (55%), Positives = 51/76 (67%), Gaps = 5/76 (6%)
 Frame = -1

Query: 228 NYSYSPARDVTMEYSNSFTTNTWXXXXXXXXXXXXXXKNSSRLQQLMWMLNELSSPYGDT 49
           ++S+SP+ D+  E+S       W              KNS+RLQQLMWMLNEL SPYGDT
Sbjct: 108 DFSFSPSHDLNFEFSGK-----WVTDILLESAHAIADKNSARLQQLMWMLNELGSPYGDT 162

Query:  48 DQKLSSYFLQALFSRM 1
           +QKL+SYFLQALFSRM
Sbjct: 163 EQKLASYFLQALFSRM 178

>gi|255568605|ref|XP_002525276.1| Chitin-inducible gibberellin-responsive
        protein, putative [Ricinus communis]

          Length = 512

 Score =  83 bits (204), Expect = 4e-014
 Identities = 42/89 (47%), Positives = 58/89 (65%), Gaps = 8/89 (8%)
 Frame = -1

Query: 267 STSEHQQSSDPNINYSYSPARDVTMEYSNSFTTNTWXXXXXXXXXXXXXXKNSSRLQQLM 88
           +T+   +S+D   ++S+SP+ D+  ++S     + W              KNS+R+QQLM
Sbjct:  96 TTTSTLESTD---HFSFSPSHDLNFDFS-----SRWATDILLETARAIADKNSARVQQLM 147

Query:  87 WMLNELSSPYGDTDQKLSSYFLQALFSRM 1
           WMLNEL SPYGD D+KL+SYFLQALFSRM
Sbjct: 148 WMLNELGSPYGDIDKKLASYFLQALFSRM 176

>gi|242390093|dbj|BAH80549.1| transcription factor GRAS family protein
        [Eucalyptus grandis]

          Length = 494

 Score =  82 bits (200), Expect = 1e-013
 Identities = 42/89 (47%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
 Frame = -1

Query: 267 STSEHQQSSDPNINYSYSPARDVTMEYSNSFTTNTWXXXXXXXXXXXXXXKNSSRLQQLM 88
           ++S H   +    + S SPARD+  ++S+      W              KNS+R+Q LM
Sbjct:  79 TSSTHTPHTYDPADVSVSPARDLNFDFSSK-----WASDILLETARAIVDKNSTRVQHLM 133

Query:  87 WMLNELSSPYGDTDQKLSSYFLQALFSRM 1
           WMLNEL SPYGD +QKL+SYFLQALFSRM
Sbjct: 134 WMLNELCSPYGDIEQKLASYFLQALFSRM 162

>gi|147772860|emb|CAN75901.1| hypothetical protein VITISV_001968 [Vitis
        vinifera]

          Length = 480

 Score =  81 bits (198), Expect = 2e-013
 Identities = 42/93 (45%), Positives = 53/93 (56%)
 Frame = -1

Query: 279 HYGFSTSEHQQSSDPNINYSYSPARDVTMEYSNSFTTNTWXXXXXXXXXXXXXXKNSSRL 100
           +Y +    H  S  P    + +    + +   NS +   W              KNS+R+
Sbjct:  60 YYPYQQQTHPSSPPPPPPPTPALLLIMPLSPPNSLSPLPWASEILLETARAIADKNSARV 119

Query:  99 QQLMWMLNELSSPYGDTDQKLSSYFLQALFSRM 1
           QQLMWMLNELSSPYGDTDQKL++YFLQALFSRM
Sbjct: 120 QQLMWMLNELSSPYGDTDQKLAAYFLQALFSRM 152

  Database: GenBank nr
    Posted date:  Thu Sep 27 19:07:00 2012
  Number of letters in database: 7,061,663,739
  Number of sequences in database:  20,571,509

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,381,401,827,709
Number of Sequences: 20571509
Number of Extensions: 2381401827709
Number of Successful Extensions: 774740294
Number of sequences better than 0.0: 0