Simple sequence repeat (SSR)
| >UN05047 CTGCTATCTGTTTCCTTCCTATTATGAGTCTCGGATTCAGATGATTGCTTTCTCTTTGGAGATCTTAAGCTTCTTTTACGTGTCCCCCTCTCAG TCTCATCATCAGTGTGAGTGTCGGAAGCTGATTCTGATTCATCTTCAGAGGAATTCTGTCTTTTAGATGTAATGTAGTTAATATTACGGATAAC CACCCTACCTCCTGATTTGTTTTTCCTGGATTTTCCAGCATTCTTATGCTGTTCTGAGTCTTCAAATTCAGAATTAGTATATCCATTATCCATA GATTGCCTCCTTTGTCCACCACTAAAATGAGGATCCTCCATGGATGATGGGTAAGGTGGTGGAGGATAAAATGGAGCAGTTCCAGGAGAATAAT GTTGTTGATAGTAGGGCATTGGGTATGGTTGATATACAGGTACGGAACCGGGTGAAGAAGAATGCATCATACCCCAAGGAGGATACGCTGGATG GGGAAATTGATATTGTTGCTGACCACCTGCATATGAATCAGTGCCTTCTGTCTCTTTAGATTCTGAATTAACATCACCCCCAGGTTCATCATGC CTGTTAGTCATACTTGAAAGCATAATTCCTGATGCATTCATGGCAGAATAATCTGATTTGGTAGACATTGCATCTTCTGCTTCTATTTCAACCC ATTGCCCGGACTCGTGTTTCTGCTTCCACAAATCCATGAACCTCAAGCAAGCACTCCCGTTCTGTTACAACTTCGGTTCCTTGAATTCTGTTAA GGCGTGCATGTTTCTTGTTCACTGCCTTTTGATCACGAACGGCAGTTTTCTCAAAGCAGCAGGAAGCTGGTTGTCAAAGACTCCATAAATTCGG TCACCTCCAGCCCGCCCTCCATCTAGATGCTCTTTGAATATCTTGTCAAAAGCACGACAGAGTTCCAAAATGGTGTACAATTTAGCCCCTTCAT CAACTGCAATTGGCCTCCCAAGACGATCCAACTCTGCTTCCATTTCTTCAATACCTTTGTTTATTAAGGCAATGATACCTGGTATTTTGGCTTT GATTACAGATTCCAGATGCTGGGAGAGAAGTTTTGCGAGATATACAGAACCCATTTTACTAGCCAAGTGTCCATAGTCAGGACTGGTATAAAAG TACTCCTCCTCCCTCCGCCTTGCATACATCATATCAGTATTTTTCATAATATCAGCTTGAGATCTATTCACAATCCCCACCCATGGATGTTGCA GTCGATAAGCTCTGCCTTCAAGGACATCTAATGCGTTAGTTCCTTTGTCCATCAGATCAAGCTTGGTCAGCACACCAAAGGTCCTTTCACCTGT TGGATCCACCTCCTTAGCAAGTTTAATAGCATCCGATGTTGCAATATCTTGGTTGGCAGGTGATATTGCTAGTATTATAGAGTTGGGCTTCTCA ACATAAGCTCGAACCATCTTTTCTATGTCTTCCACAATGGTTTCAGGTTGTCCCTCAACAGCAACTTTTGTCAGTCCAGGTAGATCGATTAAAG TTAAGTTGACAACTCTAGGGGAATATATGCTGAGATGAATTGGAATTGGAGATATTTGTTTTGACTTCCCAGTGATTCTGTCTGTTTCATCTTG AATCTCCTGACGTACCAAAGAGAAATCAGTAAACCGCCTCCGTTGCAGATGCCCAAATTCAGCATACTCTTCTCCGCCATCCGTCTTATGCAAC TGCAACACCAATGGTCGCCTTGTGACAATCCCAGATCCTCTAGGAAGAAAATCTCTCCCGACAATGCTCTCTAAAACCGAAGACTTCCCAGAAC TCTGACCGCCAACAACGGCAACAGAAGGAAGAGCGTCCCAAAGAGAGGAAAAAGTAGAGTCATCGCCGCCGTGATCACCTAAAGCCGTACAAGC TCTTTGTATACGGTTTACTAATCCGATCAAGCTCTCCATGGTCGCCATAACTAATTCTTTTAAGATCTGTACGTATATGTGTTGTTATGGAGGG GATTGTAGAGAGAGAAAATCGTTGGATTCTAGAGAGAGAGAGAATGAAGAGTGTTTGAATTGAATTGGTCGTCGA |
Primers for UN05047 SSR
| Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
| 1 | GCAACAGAAGGAAGAGCGTC | 60.142 | 20 | GACGACCAATTCAATTCAAACA | 59.845 | 22 | 244 | 1804 | 2047 |
| 2 | ACAACGGCAACAGAAGGAAG | 60.291 | 20 | GACGACCAATTCAATTCAAACA | 59.845 | 22 | 250 | 1798 | 2047 |
| 3 | CTCTCCATGGTCGCCATAAC | 60.483 | 20 | GACGACCAATTCAATTCAAACA | 59.845 | 22 | 136 | 1912 | 2047 |