Simple sequence repeat (SSR)
| >UN00305 CACAGTTTCGCATGTACATATATTTTACTGGAGGGCCCGACACTGGTAGCTCATAGCTGCATAGTAACGGGTATGGTTAAGTTAGTATTAGATA TCCAACACACCGGCGATCCTTTGAAGGAAGAAATGAGTTATCGAATAACCTTGTTGACTGCCATGTATCTGACTATTATCTGCGGATGAACCGG ACTAATTTACCTGTGCATGATTGGTAACACCTGCAATTAATGGTTATATGTATTCACTACGACAACTGTCAGCTGTGACATGTGTTTGTCTATG GTATACTTACACCTTGAGTAACACATTCCACGTTTCTATAGCCAGAATCATTGAAAGATAAGGTCTTTTCGACATGTGCATATTCATTCGAGCA TGGATAGTAGTTGTATCAGCCAAAGGAAACTTCGGCGCTGAAATTGTATGAGTGATACATCTGTCGCTGTTATACAAATACCATATTTATTTTA GTCTACCCGTGGTTCCCGTCGATAGCTTCTGATATTATGCATGCTGTCATGAAGCAAAAGTAGAACGTTTTCAGCCATTTGTCGTACCAAAATA AAGCGTAACGAAGCTGGGAAACCTGCTCGCAATTGGTCAGGCAAATATACTTTGAAGCAGGCCCTCGAGTACTGAAGGTGCACGCCAATCATTT TCCTGTAGAGTGGTCAAAACGGTTGCTGTTTGTGTAGGCATACGTCTGCTGACCAAGCGCGTTCGTCTATTATTTTCATGTAATGTGCTGGGAC CTGCTTCCCCATGCGATGTTGCATCTACGGCCAAAGGCGTTGCACGACAATTATGGGCATGCAAAGCGCGACAAACACTTTCCAAATCTTTGAC CCCGTGCGAACTGCTGCATATATTTTGCTTTGGTTCATTTATGCCTGATGTGCCACATCGTGAGATAATTCAGTCATTTTTATACTCATGAATG TCATTTCAGCTCGTGCCTTAACATCTCTGAGCTGAGCTTCCTTGCTTCCATAATTTGAAGGAGGAATAATTTATAGCTACCTCTTGAGTTAGTC CTGGCATGACTTCATCCTCTTACTTGCCTCTTCAACCAATAAGATCGTCGCGGGAAATAAATTTAACAGACATGGAAAGACTTCACATCATAGA TTTCTTAGATTCACTTTTGCGTCTAATAGGGTAAGCTGCAAAAATCATCAGCAAGGCAGCCTTTTGGTGATCTCTTGTTTTATGAAGAAGATTT GATGAGATATCGTATGTAAAACTGGTTCTTGAATCAGTGAAGTTACTCATCACATATGGGGTGTACCGGCCTTCTTGACCCCACCGGAATCCTA CCTACAACGTCGTTGCCAACGAAAAAATACGACGGAATTTGTTCGGTGTGTCGGAGTGTGTGTGTGTTTTTTTTGAGTATTTTGTTGGGAAGAA GATTCAAGAAGAAAATGGAAGGGGTGGATTTATTAGAGATGAGAGAAGCTTCAAGAGAGGAAGCAAAAGGCAACTGTTTAGTACAAATGAGTAA AAAAAAAATTGAAGAATCACATACCTCTCAGCAAGTGGGGTGTGT |
Primers for UN00305 SSR
| Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
| 1 | GCTGCAAAAATCATCAGCAA | 59.96 | 20 | AATCCACCCCTTCCATTTTC | 59.996 | 20 | 278 | 1163 | 1440 |
| 2 | ATACGACGGAATTTGTTCGG | 59.823 | 20 | CAGTTGCCTTTTGCTTCCTC | 59.993 | 20 | 144 | 1343 | 1486 |
| 3 | CAAAAATCATCAGCAAGGCA | 59.809 | 20 | AATCCACCCCTTCCATTTTC | 59.996 | 20 | 274 | 1167 | 1440 |