Simple sequence repeat (SSR)
| >UN00041 TTTTGAAGGCTAACAATCCAAATCTGATAACAAATTAAGAATGATAAAAGTGGCCACAAACGACACGCAACAAAATGAAAAACAAGTGTGAAGA ATCCAATCCGGTCCATTCAGGTTACCTGCCCTGAATTACATCAATTTTATCATGCAAAACAATCTAAAGATATACCATACCATACGATCTTCTA AACTCCCCATACCCCGCTCCGGCGGGATTGGGTATTGTTGTTGTTGTTGTATACGATCTTCTAAACTAGCTACAGTGACTACATAAAAACAATT AATAGACACAACTAACACAACAAACAACTCTCGACACCAAAAAGGAAAGAGTTGTCTGGACTCTATGCATGCATATATAAAGCCTTTATTTCAC TCATCATGTTGAGATAAAAGTCCACAGCTTTCGTCCTATGGAAACTTCACCAGGATGCTCAACCTCCTCTTCATCTTCAGAATCAGCGTCCTCC TCATCATCATCCTCCTCCTGGGCAGCTGCAGGAGTTCCAAGCTCTTGATCATCATTGTGATGCTCCTTATTCTGTTGAGGTGTCCCGTTGACTT CTTCGCTCAAAGCCATATCTTCTACACTCTTGTTTGCTACCTCATTCTCCCCATCTACATTATTATGGGCTTGCGAGTCTATGTCATGATCTCC ATTTGCAGAAGCTGTTGAAGCTCCAGGCTGAACCTTTGAAGAGCCACGGGATCTTCTCTTTCTCCCAGCAACACCATTCTCTTTATTTGTGAGG CCGTCAGCCCCATCTTCTTTACTTTGATTAGACAGGGTTCCGTTAACAGCCGTGGGGCCTCCAGTCTTTCGGCGTAGGTTGTATCGTGTTACTG GAGGAGCCTCTACACCTCTAGCAACTTTCCGCTTCGTGTTCCTGCGACCCCCGGTTGTGACACTGACAGACTGTTCACTGTACTCAGGTTCTTG TACACTTGCACGTTTACGGCTTTCTGTTTTTCCACCTTTTGATACTCCCTGACTCACTTCATTTGTGTAAGCAGAGTCTTCCGTGACACCATTG GCGCTCTCACTTACATTATTGTCACTAGTAGCATTATGATCTCCAACAGCTGCCTTTGTAATACGTGCTCTAGTAGCCCTAGGTCTAAGCCTCT TAGTCGGCTTACTATTTTCAGGCTGCTGAGGAACTTTCTCAATATCATGTGACTGCTCCACCTGTCTCTTGACATCATAAGAATCTGACACAAC TCTAGCTGACACTTCTGGTTCATCCTCGGAGCTCAGTATATATTCAGGTATTTCACCAACATCCACAAGCTTCTCTTGTGCTTCTGTTTCACCA GCTTCATGTTCATTCCTTTTCCCTGCTGAGAATATAGAGATCTTTGAGGTACATTTTTTTAACCATGTGAGGGTTCCGCCAGAACCAGGAGATC CTGAATTAATCATAGCCATGGAGGTCCCGACATTTGGTCTCTCAGATGTACCATGAACAGCTTCCTTCAGATAACTGTCAGATAACTTCGGCAA CTGAAAATTATCAGTGTTCTTAATTTCTGCTAAAGATTGAAGATCAGACAAGACGAACTCCGAAACTATCTCTCCACAGTCCTTGCAGCCCTTC TGTTTCTCAACAAATGCAATGAACCGTTCACGTTCTCTAACGAATTGTTCACGCTGGTCCTTCAACTTCATGCTAAGTGAAACGAGCTTATCAA TATCGTTTCTCATTCCAAGCTGTTGCCCTTCTAGATGCTTCTGATTAGCAGATATATCCTGTTTTTCTTTATCTAATTTGATTCTTTCTGATTT CGTCTCTTCCATTTCTCTACTTGCAACATCTCTCAAGTATCTCAAATTAGCTAAATCTCTTTCTTTCTCTTCTTCAAATGATTTTTCACGTTCG AGCATGCGGTTCTCAATCTCAGTTTCTTTGAGTTGCAATTTGGATTCGAGTTCTTGTTTCTTCACTTCAAAATCATGAAGCATTTGGGATTCTT TGCTGTTGTATTTTTCTGCTAAGACAGATTTCTCGTGCTCCATGTTAGCAGCAAACGATTCTTTGGCCAACTTAAGTGATTCCAACTCTCTCTC TACATAACTCTCGGTTTCCAACCTCATATTATGCAACTTTTCTTCTTCTAAACGATTCAATTTTTCCATCTTTTCCTTCTGTGCAGCAAAAGAA TCCAGTTCCTTCTGTATCTCAGCTCTTTTTTCATCAAGATCTTCCCACTCTTTTTCGAATTTCTCCTTTTCCAGCTTCAGATTTTCTCGTTCCG TCAGAACGACTTCCCATTCTTGTCTGTTTTTTTCTATCTCTTGTTTTAATTCAGATTGCAGACGGACAAAATCAGACCTTTCTTCTTCTGTTAC TTGAAGTTTTTCCCGATCATCATTCAACTTTGATCTTTGTTCTTCAATTTCAATACCTATTTTCTCGAGCTCAGCCTTGAGACTCGACAGATTC TCTGTTTCAGTGCTTAGTTCTTTCCTTACTTTGTCTAAGTTCTTCTCCTCGGCTTTAAGGGACTTTTCTTTCTCCTTTAAAGCCTTTGACTTCA AATCAATATCCTTCTCTTTTTCCTTGATTTTCTCGAGTTTCTTTTCCAGAGCTTGTTCTCGTTTAGCGATTTTTCCTTCCAAGTGATTGACTTC AATTTCCTTTTTCTCCACTTCAGCGACCTTGATTTTGAAATCCTCATCCAACGATCTCCTCTTTTGTTCCATCTCCAACTCAAAATCATGTGTT TTCGCATCCAGCATGACCTTGTGCTCATCCAGAAGTTTTTGAATCTCTACTTGTTCTCTTGCGTTAAGCTTCTCCTCTAGCTCTAGTAATTCCT TCTCTCTAACCTCTAAGTTCTTGCTAATAACAGCAGCTTCCTTCTCTTTCAAAGCTAGGTTTTCGATCCTTTTACTAATATCATCTTCTTTACT TTTCAACTCCAAATTAGCCACATCTATCCGCTTCTGTGCTTCTTCAAGATCAAGTTGTTTCTGTTTAAATACTCTATCACTATCATTCGCAAGC TCTTCCCTTTGGTTGAGCAGTCGACGAACCTCAGCCAGCTTTTCCTCTCCCTCTTGTAACTTCCTCTCCCATTCTCTTAAGTCCTCCCTTTGGT TGGCTAAGTTCCGTTCATGTGCATCTCTCTCATTATTAAATGACATGCGCTCTCTCAGGAGTGAACTACTGAAATTGAACCATGCCAATGAATC AACCCCACTGTACCTGTGCTCATGTTCATCTTGTACGTGTTCAGCGTGTCCAGGATCAGCTTGTACGTGTTCATCTTATAAGTGTTCAGCTTGC ACGTGCTCAGTGTATTCGCATTCAGTGGGTTGGCGTTCAGTGTGTTCCCGCTGAACCAACCCAACCTGATAACGCAACCCAGCCTGCTGAACCA ACCACATAACCATGCC |
Primers for UN00041 SSR
| Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
| 1 | ACGACACGCAACAAAATGAA | 60.157 | 20 | CCTTTTTGGTGTCGAGAGTTG | 59.76 | 21 | 268 | 60 | 327 |
| 2 | TGTGAAGAATCCAATCCGGT | 60.317 | 20 | CCTTTTTGGTGTCGAGAGTTG | 59.76 | 21 | 241 | 87 | 327 |
| 3 | TCTAAACTCCCCATACCCCG | 61.05 | 20 | GGTTGAGCATCCTGGTGAAG | 60.656 | 20 | 256 | 185 | 440 |