Simple sequence repeat (SSR)
>UN71772 AAACAGATCCAGATTCATATGTATTAACCACATAAATGGAGCTGTAATTACAAGATATATTAAGTGATATATACACCTCCATGACTGCTAATCC ACTATCAAGAAATTACAAGATTCATGAAATATCAAGAGAAAGTAGTATACAAAACCAATACACAACAATGCAAGTACATCTATCCAAAACGGAG TATTGATCATATATAACTTTCTAGAGGTGAACTTTCTAGTGAATCTCTCCTTTTTCTCCTTCTTGAACATCACACTCTTTTCCAATTTGGTATA AGCATATATCACCACTTGATCTTTGTGTTGCATGTACATATGTTGGGTTATCTTCTTGTGCGAGGAACCACAGCTATCACTTGTGAAGTTTACA TGACTCCATCACGATCACCTGCATTACTTTTGCGTTTGCTCTTCAAGACCGTAGAAGATGAAGGATTACTGTGCCAGTTGCGTTTCCTCTGATT AATAAACCAATTGTTTATCTGCTTCAATTGCAGGCCTGTTTCCTGAACTAACCGTGCCTTGTCTTCTTCAGTAGGGTATGGCCATTTGGCATGT GATTGCCACCAAGATTTTAGAACAGAGGTGGTATCACCAGGAAGTTTCCCTGCCCTCCTTTTGCGTAATATCTCTTCTCTAATGTCTACAATCT TCTCCTTGTAACCTTGTTTGAGTTCATGCTTTAGCTCTTGCCTGACACGCTCCATCAATGATCTCTCGCTCTCAGTAGGAAGGCCAAATCCCAT GCTGTCATGAGCATCGAGACTTCCATCAAATAGGTTGGCATCACTGTCTACCTGATCTTCATCGTCATCAGACATCGTTGCACCTGTGCCTTCT CCAGGTGACACTCCTGTTAAGCTTTGTAGGGACTGCTCAATCTCCCAGCAAGCCATAACTGCTTCCATCGCATGAACTCTAACATGTTGCTGTA ATTGTTCTTTGAAAGAACAAAGCAATAGAACATAGTGTGTCATAAATTGATCAAGCTCCTTATCGTCATGATCATGATCATGATCAAGATCACC AAGACTCGAATACTTTGAGACAACCTGCTGAGACTGTGCAAGCTGTGCATCTATTCTAGGCAGCTGATCCACAGGTGTAGCAATTCGCAAACAC GCTACATGAGCTGCTAACAACTGCTCGTACAAAGGGTGTGACAATACCTCAGCTTTTTGTCTTGCATTTTGCCAGCCCATCAACGCTCCACCAC CGCCTTCTCCATCACCCGCAACGACCTCAGGTTCTCCTCCTCCAACAACATTATGATGATCAACTACAACCTGGCCAGCAGCAAGGTTTCTTGA ATGGTCGTTGAAATCATTTCTATCACTTCCTGTTACATTACTGATGTTCCTATGTAGTATCGGTCTCGATAGCCACTGATTATTATTATTATTA TTGTGTAGATGGTGCTGTGACGAGGCAGAATCTAAGTTGTTATTATTGGTCTGCAAGTTGAGAAAGATATTACTATTATTGTGGCCAGCTTGTT GCCTGAGAATTGCGCTATTGAGCCAGTGATCTTTTCCTGTTGAATTGTTGGAGAAAGGTGGTTGCTCAAGTGGTATATCTTGTGAGATATCGTT AGGAGGATGATATGCCATTTTACGATGGCCTTAGGCTTTGCTGGTTATGGTAATGAGATATTGGAGAGTGAGATATGATGGATATGAATATAAT AATGGAAAGAAACTCTAGATATACTGCGCATCAAGTGATTTAGTCA |
Primers for UN71772 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | CAGGTTCTCCTCCTCCAACA | 60.229 | 20 | GGCTCAATAGCGCAATTCTC | 59.951 | 20 | 279 | 1250 | 1528 |
2 | AACTACAACCTGGCCAGCAG | 60.312 | 20 | GGCTCAATAGCGCAATTCTC | 59.951 | 20 | 245 | 1284 | 1528 |
3 | CAGGTTCTCCTCCTCCAACA | 60.229 | 20 | CAACAAGCTGGCCACAATAA | 59.729 | 20 | 256 | 1250 | 1505 |